RetrogeneDB ID: | retro_mmus_633 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:31413814..31414165(-) | ||
Located in intron of: | ENSMUSG00000000296 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Supt4a | ||
Ensembl ID: | ENSMUSG00000020485 | ||
Aliases: | Supt4a, AL022777, Supt4h, Supt4h1, Supt4h1a | ||
Description: | suppressor of Ty 4A [Source:MGI Symbol;Acc:MGI:107416] |
Percent Identity: | 99.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSW |
MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI.AMMSPEDSW | |
Retrocopy | MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSW |
Parental | VSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT |
VSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT | |
Retrocopy | VSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 16 .96 RPM |
SRP007412_cerebellum | 0 .04 RPM | 17 .85 RPM |
SRP007412_heart | 0 .16 RPM | 12 .89 RPM |
SRP007412_kidney | 0 .12 RPM | 20 .79 RPM |
SRP007412_liver | 0 .03 RPM | 14 .47 RPM |
SRP007412_testis | 0 .05 RPM | 11 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017524 | 2 retrocopies | |
Homo sapiens | ENSG00000213246 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007232 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010164 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025583 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007579 | 2 retrocopies | |
Mus musculus | ENSMUSG00000020485 | 2 retrocopies |
retro_mmus_2857, retro_mmus_633 ,
|
Nomascus leucogenys | ENSNLEG00000008159 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025823 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008233 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009451 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002320 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007845 | 3 retrocopies |