RetrogeneDB ID: | retro_mputfur_1272 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897064.1:3690680..3691455(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ODC1 | ||
Ensembl ID: | ENSMPUG00000013321 | ||
Aliases: | None | ||
Description: | ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109] |
Percent Identity: | 70.5 % |
Parental protein coverage: | 56.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | ARELNIDIIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNM-YLLDIGGGFPGSEDVKLKFEEIT |
A.EL.IDIIGVSF.VGSGCT..ET.V..I.....VFDMGAE.GFNM.YLLDI..GF.GSEDVKLKF.EIT | |
Retrocopy | AKELHIDIIGVSFLVGSGCT--ETSVHTIPETSTVFDMGAELGFNM>YLLDIKCGFLGSEDVKLKFKEIT |
Parental | SVINPALDKYFPADSGVSIIAEPGRYYVASAFTLAVNIIAKK-LVLKEQTGSDDEEESNEQTFMYYVNDG |
SVIN.ALDK.FPA..GV.IIAE..R..VASAF.L.VNIIA...LVLKEQT.SDDE.E.NEQTF.YY.N.G | |
Retrocopy | SVINLALDKCFPAGLGVRIIAECSR*DVASAFMLVVNIIAXXXLVLKEQTDSDDEDELNEQTFRYYMNNG |
Parental | VYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWGPTCDGLDRIVERCDLPEMHVGDWMVFENMGAYTV |
VY.SFNCI..DHAH.K.L.QK.PKP..K.YSTSIW.PTCD.L..IVE.CDLP.MH.GDW..FENMGAYTV | |
Retrocopy | VYESFNCIICDHAHIKSLMQKKPKPA*K*YSTSIWVPTCDSLNCIVECCDLP*MHMGDWTLFENMGAYTV |
Parental | AAASTFNGFQRPTIYYVMSGPTWQLMQQIQSRDFPAELEEPDASPLPVSCA |
...STF.GFQRPTIYYV.S.PTWQ.MQQIQ...F..E.EE.D.S..P.S.A | |
Retrocopy | PTVSTFKGFQRPTIYYVTSEPTWQPMQQIQNHEFLLEGEEQDVSTQPMSHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |