Parental gene:

ENSDNOG00000018474

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2094:67943..72180(-)


>ENSDNOG00000018474
ATGAACAACTTCAGTAATGAGGAGTTTGACTGCCATTTCCTTGATGAAGGTTTTACTGCCAAGGACATTCTGGACCAAAA
AATTAATGAAGTTTCTTCTTCTGATGATAAAGATGCCTTCTATGTTGCGGACCTTGGAGACATTCTAAAGAAACATCTGA
GATGGTTAAAAGTTCTTCCTCGTGTCACCCCCTTCTATGCAGTCAAATGTAATGACAGTAAAGCCATAGTGAAGACCCTG
GCTTCCATAGGGACAGGATTTGATTGTGCTAGCAAGACCGAAATTCAGTTGGTGCAGAGTCTCGGGGTGCCGCCAGAGAG
GATAATCTATGCAAACCCTTGTAAACAAGTGTCTCAAATTAAGTATGCCGCCAATAATGGAGTTGAGATGATGACTTTTG
ACAGCGAGGTTGAGTTGATGAAAGTGGCCAGGGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCACTGATGACTCC
AAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGAGCCACACTCAAAACCAGCAGGCTTCTTTTGGAAAGGGCTAAAGAGCT
CGATATCGATGTCATTGGTGTCAGCTTTCATGTGGGAAGTGGCTGTACTGATCCTGAAACCTTTGTGCAGGCCATCTCTG
ATGCCCGCTGTGTCTTTGACATGGGAGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGTGGTGGCTTTCCCGGA
TCTGACGACGTGAAGCTTAAATTTGAAGAGATAACCAGTGTCATTAATCCAGCATTAGACAAGTATTTCCCGTCAGACTC
TGCAGTGAGAATCATAGCTGAACCAGGCCGATATTATGTTGCATCAGCTTTCACACTTGCAGTGAATATCATTGCCAAAA
AAATTGTATTTAAGCAACAGACAGGCTCTGACGATGAAGATGAATCGAGTGAACAAACATTTATGTATTATGTGAATGAC
GGAGTATATGGATCATTTAATTGTATCCTTTATGATCATGCGCACGTAAAGCCTCTTCTGCAGAAGNNNNNNNNACCAGA
TGAGAAGTATTACTCATCTAGCATATGGGGACCCACGTGTGATGGCCTTGATCGGATCGTTGAGCGCTGTGGCCTGCCGG
AAATGCACGTGGGCGACTGGATGCTCTTTGAGAACATGGGTGCTTACACTGTGGCTGCTGCTTCCACTTTCAATGGGTTC
CAGAGGCCAACCATCTACTACGTTATGTCAGGGCCCGCATGGCAAGTCATGCAACAAATCAAGAGCCGGGGGTTTCCGCC
CGAAGTAGAGGAGCAAGACGCCAGTGCTCTGCCTTTTTCCTGTGCTTGGGAAAGTGGGATGAAGCGCCACCCGGCCACTT
GTGCTCCAGCTAGTATTAATGTGTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 36 .95 RPM
SRP012922_cerebellum 12 .10 RPM
SRP012922_heart 6 .26 RPM
SRP012922_kidney 22 .45 RPM
SRP012922_liver 6 .97 RPM
SRP012922_lung 19 .40 RPM
SRP012922_quadricep_muscle 3 .12 RPM
SRP012922_spleen 57 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 possible_ortholog 1 retrogene
retro_btau_552,
Choloepus hoffmanni ENSCHOG00000010898 possible_ortholog 2 retrogenes
retro_chof_1618, retro_chof_2111,
Callithrix jacchus ENSCJAG00000006576 ortholog_one2many 2 retrogenes
retro_cjac_3170, retro_cjac_3857,
Equus caballus ENSECAG00000022690 possible_ortholog 2 retrogenes
retro_ecab_1002, retro_ecab_957,
Loxodonta africana ENSLAFG00000005330 possible_ortholog 2 retrogenes
retro_lafr_218, retro_lafr_850,
Myotis lucifugus ENSMLUG00000010423 possible_ortholog 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 ortholog_many2many 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_many2many 1 retrogene
retro_mdom_262,
Mustela putorius furo ENSMPUG00000013321 possible_ortholog 1 retrogene
retro_mputfur_1272,
Mus musculus ENSMUSG00000011179 possible_ortholog 12 retrogenes
retro_mmus_2588, retro_mmus_2744, retro_mmus_2745, retro_mmus_2746, retro_mmus_2747, retro_mmus_2834, retro_mmus_2922, retro_mmus_3237, retro_mmus_3677, retro_mmus_503, retro_mmus_912, retro_mmus_984,
Nomascus leucogenys ENSNLEG00000013820 ortholog_one2many 1 retrogene
retro_nleu_1119,
Pongo abelii ENSPPYG00000012654 ortholog_one2many 1 retrogene
retro_pabe_3090,
Ictidomys tridecemlineatus ENSSTOG00000000386 possible_ortholog 2 retrogenes
retro_itri_1751, retro_itri_801,
Tursiops truncatus ENSTTRG00000004611 possible_ortholog 3 retrogenes
retro_ttru_1940, retro_ttru_731, retro_ttru_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_392 88.22 100.00
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2. retro_dnov_740 90.34 100.00
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3. retro_dnov_766 88.50 72.67
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4. retro_dnov_781 90.97 100.00
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5. retro_dnov_923 85.84 74.19
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6. retro_dnov_943 64.19 62.69
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7. retro_dnov_958 90.04 56.18
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8. retro_dnov_1032 90.75 100.00
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9. retro_dnov_1128 90.56 100.00
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10. retro_dnov_1129 89.46 100.00
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11. retro_dnov_1137 89.70 50.33
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12. retro_dnov_1212 89.44 100.00
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13. retro_dnov_1235 89.66 56.18
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14. retro_dnov_1418 91.82 57.92
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15. retro_dnov_1434 89.15 73.75
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16. retro_dnov_1493 86.22 73.10
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17. retro_dnov_1594 72.80 55.53
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18. retro_dnov_1595 89.36 60.52
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19. retro_dnov_1677 91.19 56.18
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20. retro_dnov_1778 89.29 66.16
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21. retro_dnov_1810 90.70 83.30
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22. retro_dnov_1813 88.03 80.69
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23. retro_dnov_2016 90.52 100.00
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24. retro_dnov_2027 85.82 87.64
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25. retro_dnov_2108 92.26 100.00
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26. retro_dnov_2147 90.89 96.75
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27. retro_dnov_2180 87.77 100.00
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28. retro_dnov_2212 89.22 100.00
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29. retro_dnov_2461 90.75 100.00
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30. retro_dnov_2551 89.45 89.80
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31. retro_dnov_2564 90.94 63.34
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Download FASTA sequences of all ENSDNOG00000018474 retrocopies