RetrogeneDB ID:

retro_mluc_281

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430572:39988..41371(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000006675
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000010423
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_281
ATGAACAACGTTAGTAATGAAGAGTTTGACTGCCATTTCCTCGATGAGGGCTTTACTGCCAAGGACATCCTGGACCAGAA
AATTAATGAAGTCTCTTCTTCAGACGACAAGGATGCCTTCTACGTTGCGGACCTGGGAGACATTCTAAAGAAACATCTGC
GGTGGCTCAAAGCTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGACAGCAGGACCATCGTGAAGACCCTG
GCTGCCATCGGGACAGGCTTTGACTGCGCCAGCAAGACTGAAATACAGTTGGTGCAGAGTCTTGGGGTGCCTCCAGAGAG
GATCATCTATGCAAACCCTTGTAAACAAGTGTCTCAGATTAAATACGCTGCCAATAACGGAGTCCAGATGATGACTTTCG
ATAGCGAAGTCGAGCTGATGAAAGTCGCCAGGGCACATCCAAAGGCAAAGCTGGTGTTGCGCATTGCCACCGATGACTCT
AAAGCAGTCTGTCGTCTCAGTGTTAAATTTGGTGCCACACTCAAGACCAGCAGGCTCCTTTTGGAGCGGGCCAAGGAGCT
GAACATCGATGTCATCGGTGTCAGCTTTCACGTGGGCAGTGGCTGTACTGACCCTGAGACCTTTGTGCAGGCCATCTCTG
ATGCCCGCTGTGTCTTTGACATGGGGGCTGAGGTTGGTTTCAACATGTACCTGCTGGACATTGGCAGTGGCTTTCCTGGT
TCTGAGGATGCAAAGCTTAAATTTGAGGAGATCACCAGTGTAATCAACCCAGCCCTGGACAAGTATTTTCCATCAGACTC
GGGAGTGACAGTCATAGCTGAGCCGGGCAGATACTATGTTGCATCAGCTTTCACGCTTGCGGTTAATATCATTGCCAAAA
AGCTGGTCTTGAAGGAACAAACGGGCTCTGACGATGAGGAGGAGTCGAGCGAGAAGACCTTCATGTATTACGTGAACGAC
GGAGTGTACGGGTCATTTAACTGCATCCTCTACGATCATGCGCACGTGAAGCCCCTGCTGCAGAAGAGGCCCAAACCAGA
TGAGAAGTACTACTCATCCAGCATCTGGGGACCGACCTGTGACGGCCTCGATCGCATCGTGGAGCGCTGCGGCTTGCCCG
AGATGCACGTGGGGGACTGGATGCTCTTTGAAAACATGGGTGCTTATACCGTGGCTGCTGCTTCTACTTTCAATGGGTTC
CAGAGGCCGACGATCTACTATGTGATGTCAGGGCCGACATGGCAACTGATGCAGCAAATCCAGAACCGCGACTTCCCACC
CGAGGCGGAGGAGGACGCCGTCGCCCTGCCTGTGTCCTGCGCCTGGGAGAGCGGGATGGAGCTCCTCCCAGCAGCCTGCG
CGTCAGCCCACGTGAACGTGTAG

ORF - retro_mluc_281 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.13 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMNNVSNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKC
MNNVSNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKC
RetrocopyMNNVSNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKC
ParentalNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELM
NDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELM
RetrocopyNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELM
ParentalKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELHIDVIGVSFHVGSGCTDPETFVQ
KVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKEL.IDVIGVSFHVGSGCTDPETFVQ
RetrocopyKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQ
ParentalAISDARCVFDMGAEVGFNMYLLDIGGGFPGSEDAKLKFEEITSVINPALDKYFPSDSGVTVIAEPGRYYV
AISDARCVFDMGAEVGFNMYLLDIG.GFPGSEDAKLKFEEITSVINPALDKYFPSDSGVTVIAEPGRYYV
RetrocopyAISDARCVFDMGAEVGFNMYLLDIGSGFPGSEDAKLKFEEITSVINPALDKYFPSDSGVTVIAEPGRYYV
ParentalASAFTLAVNIIAKKLVLKEQTGSDDEEESSEKTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKY
ASAFTLAVNIIAKKLVLKEQTGSDDEEESSEKTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKY
RetrocopyASAFTLAVNIIAKKLVLKEQTGSDDEEESSEKTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKY
ParentalYSSSIWGPTCDGLDRIVERCGLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI
YSSSIWGPTCDGLDRIVERCGLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI
RetrocopyYSSSIWGPTCDGLDRIVERCGLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI
ParentalQNRDFPPEAEEDAGALPVSCAWESGMELLPAACASARVNV
QNRDFPPEAEEDA.ALPVSCAWESGMELLPAACASA.VNV
RetrocopyQNRDFPPEAEEDAVALPVSCAWESGMELLPAACASAHVNV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_281 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 16 parental genes, and 65 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000114151 retrocopy
retro_amel_414,
Bos taurus ENSBTAG000000042561 retrocopy
retro_btau_552,
Choloepus hoffmanni ENSCHOG000000108982 retrocopies
retro_chof_1618, retro_chof_2111,
Callithrix jacchus ENSCJAG000000065762 retrocopies
retro_cjac_3170, retro_cjac_3857,
Dasypus novemcinctus ENSDNOG0000001847431 retrocopies
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Equus caballus ENSECAG000000226902 retrocopies
retro_ecab_1002, retro_ecab_957,
Loxodonta africana ENSLAFG000000053302 retrocopies
retro_lafr_218, retro_lafr_850,
Myotis lucifugus ENSMLUG00000010423 1 retrocopy
retro_mluc_281 ,
Macaca mulatta ENSMMUG000000204412 retrocopies
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG000000147791 retrocopy
retro_mdom_262,
Mustela putorius furoENSMPUG000000133211 retrocopy
retro_mputfur_1272,
Mus musculus ENSMUSG0000001117912 retrocopies
retro_mmus_2588, retro_mmus_2744, retro_mmus_2745, retro_mmus_2746, retro_mmus_2747, retro_mmus_2834, retro_mmus_2922, retro_mmus_3237, retro_mmus_3677, retro_mmus_503, retro_mmus_912, retro_mmus_984,
Nomascus leucogenys ENSNLEG000000138201 retrocopy
retro_nleu_1119,
Pongo abelii ENSPPYG000000126541 retrocopy
retro_pabe_3090,
Ictidomys tridecemlineatus ENSSTOG000000003862 retrocopies
retro_itri_1751, retro_itri_801,
Tursiops truncatus ENSTTRG000000046113 retrocopies
retro_ttru_1940, retro_ttru_731, retro_ttru_843,


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