RetrogeneDB ID: | retro_mmul_157 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:63450325..63451711(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000030822 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.13490 | ||
Ensembl ID: | ENSMMUG00000020441 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNNFGNEEFDCHFLDEGFTAKDILDQKINEVSFSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKC |
MNNFGNEEFDCHFLDEGFTAK.ILDQKINEVSFSDDKDAFYVADLGDILKKHLRWL.ALPRVTPFYAVKC | |
Retrocopy | MNNFGNEEFDCHFLDEGFTAKGILDQKINEVSFSDDKDAFYVADLGDILKKHLRWLNALPRVTPFYAVKC |
Parental | NDSKAIVKTLAAVGTGFDCASKTEIQLVQNLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELM |
NDSKAI.KTLAAVGTGFDCASKTEIQLVQ.L.VPPERIIYANPCKQVSQ.KYAANNGVQMMTFDSEVELM | |
Retrocopy | NDSKAIMKTLAAVGTGFDCASKTEIQLVQSLRVPPERIIYANPCKQVSQTKYAANNGVQMMTFDSEVELM |
Parental | KVTRAHPKAKLVLRIATDDSKAVCRLSVKFGATLRNSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQ |
KV.RAHPKAKLVLRIATDDSKAVC.LSVKF.ATLRNSRLLLERAKE.NIDVVGVSFH.GSGCTDPETFVQ | |
Retrocopy | KVARAHPKAKLVLRIATDDSKAVCCLSVKFRATLRNSRLLLERAKEVNIDVVGVSFHAGSGCTDPETFVQ |
Parental | AISDARCVFDMGAEVGFSMYLLDIGGGFPGSEEVKLKFEEITNVINPALDKYFPADSGVRIIAEPGRYYV |
AISD.RCVFDMGAEVGFSMYLLDIGGGFPGSE.VKLKFEEIT..INPALD.YF..DSGVRIIA.PGRYYV | |
Retrocopy | AISDTRCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITSIINPALDRYFLSDSGVRIIAKPGRYYV |
Parental | ASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKY |
ASAFTLAVNII.KKIVLKEQTGSDDEDESSEQTFM.YVN.GVYGSFNCILYDHAHVKPLLQKRPKPD.KY | |
Retrocopy | ASAFTLAVNIISKKIVLKEQTGSDDEDESSEQTFMCYVNYGVYGSFNCILYDHAHVKPLLQKRPKPDKKY |
Parental | YSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQF |
YSSSIWGP.CDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRP.IYYVMSGPAWQL.QQF | |
Retrocopy | YSSSIWGPICDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPVIYYVMSGPAWQLTQQF |
Parental | QNPDFPPEVEEQDASTLPVSCAWESGMKRHPAACASAGINV |
QNPDFPPEVEEQD.STLPVSCAWESGMKRHPAACA.AGINV | |
Retrocopy | QNPDFPPEVEEQDTSTLPVSCAWESGMKRHPAACALAGINV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 15 .58 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 15 .47 RPM |
SRP007412_cerebellum | 0 .26 RPM | 26 .02 RPM |
SRP007412_heart | 0 .24 RPM | 36 .57 RPM |
SRP007412_kidney | 0 .47 RPM | 80 .51 RPM |
SRP007412_liver | 0 .24 RPM | 36 .06 RPM |
SRP007412_testis | 0 .49 RPM | 182 .10 RPM |