RetrogeneDB ID: | retro_mputfur_577 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896922.1:4964598..4965082(-) | ||
Located in intron of: | ENSMPUG00000013505 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NT5C3A | ||
Ensembl ID: | ENSMPUG00000005546 | ||
Aliases: | None | ||
Description: | 5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820] |
Percent Identity: | 55.62 % |
Parental protein coverage: | 55.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | NQDSAVHVKMMPEFQRSSVRIKNPARVEEIICGLIKGGAGKLQIITDFDMTL-SRFSYEGKRCPTCH-YV |
.Q..AV.VKM...F..SSV..KNP.R.EE...GLIK.G...LQII.DF..TL.S.FSY.GK.CPTCH... | |
Retrocopy | SQEPAVCVKMRLKFPKSSVHVKNPIR-EEMTFGLIKEGPATLQIIMDFSITL>SIFSYKGKGCPTCH>II |
Parental | IDNSKLITD-ECRKKLLQLKEKYYAIEIDPVLTVEEKYPYMVEWYTKSHGLLVEQALPKAKLKEIVAESD |
IDN.KL.TD.E.RK.......K.........L....KY...VE.Y..S.GLLVEQAL.KAKLK.IVA.SD | |
Retrocopy | IDNHKLVTD>EARKSYCN*RTKTMLLKL--ILFLQQKYS*VVEPYPNSQGLLVEQALLKAKLKGIVAGSD |
Parental | V-MLKEG-YENFFDKLQEYGIPVFIFSAG |
V...KEG.Y.N.FDKLQ....PVF.FSAG | |
Retrocopy | V<LFKEG<Y*NVFDKLQQHSLPVFKFSAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006624 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016709 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003154 | 1 retrocopy | |
Equus caballus | ENSECAG00000011777 | 1 retrocopy | |
Homo sapiens | ENSG00000122643 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028164 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005546 | 2 retrocopies |
retro_mputfur_1175, retro_mputfur_577 ,
|
Mustela putorius furo | ENSMPUG00000010759 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013182 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005981 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022912 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026363 | 2 retrocopies |