RetrogeneDB ID:

retro_mputfur_1175

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL897034.1:2058551..2059052(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NT5C3A
Ensembl ID:ENSMPUG00000005546
Aliases:None
Description:5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820]


Retrocopy-Parental alignment summary:






>retro_mputfur_1175
TTAAATCACATGATGGCAGAATCTGATGTTATGCTCAAGGAAGAGTATGAGAATTTCTTTGATAAACTCCAGCGATACAG
TATTTCTGTGTTCATATTTTTAGCTGGTATTGGTGTTATGCTGGAGGAGGTAGTCCATCAGGCTAGCGTTTATCACCCAA
ACATCACAGTAGTGTTCGGCTTCATGGATTTTGATGGTAATGGGGGTGCTCAAAGGATTTAAAAGCAAACTAATTTCTTT
ATTTAACAAACATGATGGTGCCTCGAAGAATACAGAATATTTCAATTGATGAAAAGAAAATAGCAACTAACTCTGCTGGG
AGATTCTCAAGGGGATATAAGAATGGCAGATGAAGTAGCTAATGTTGAACACATTCTGAAAATTGGATATCTAAATGATA
GGGTGGAAGAGCTTTTTAAAAAGTACATGGACTCTAATGACATTGTTTTAGTAAAAGATGAATCTTTGGATGTAGCCAAC
TCTGTCTTACAGAAGATTCTA

ORF - retro_mputfur_1175 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.88 %
Parental protein coverage: 56.23 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLKEIVAESDVMLKEGYENFFDKLQEYGIPVFIFSAGIGDILEEVIHQAGVYHPNITVVSNFMDFDDN-GV
L....AESDVMLKE.YENFFDKLQ.Y.I.VFIF.AGIG..LEEV.HQA.VYHPNITVV..FMDFD.N.GV
RetrocopyLNHMMAESDVMLKEEYENFFDKLQRYSISVFIFLAGIGVMLEEVVHQASVYHPNITVVFGFMDFDGN>GV
ParentalLKGFKGELIHVFNKHDGALKNTEYFNRLKDNSN-IILLGDSQGDIRMADGVANVEHILKIGYLNDRVDEL
LKGFK..LI..FNKHDGA.KNTEYFN..K.NSN...LLGDSQGDIRMAD.VANVEHILKIGYLNDRV.EL
RetrocopyLKGFKSKLISLFNKHDGASKNTEYFN**KENSN<LTLLGDSQGDIRMADEVANVEHILKIGYLNDRVEEL
ParentalLEKYMDSYDIVLVKDESLDVANSILQKIL
..KYMDS.DIVLVKDESLDVANS.LQKIL
RetrocopyFKKYMDSNDIVLVKDESLDVANSVLQKIL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_1175 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_1175 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000066241 retrocopy
Bos taurus ENSBTAG000000167091 retrocopy
Canis familiaris ENSCAFG000000031541 retrocopy
Equus caballus ENSECAG000000117771 retrocopy
Homo sapiens ENSG000001226431 retrocopy
Gorilla gorilla ENSGGOG000000281641 retrocopy
Mustela putorius furoENSMPUG00000005546 2 retrocopies
retro_mputfur_1175 , retro_mputfur_577,
Mustela putorius furoENSMPUG000000107592 retrocopies
Pteropus vampyrus ENSPVAG000000131822 retrocopies
Rattus norvegicus ENSRNOG000000059811 retrocopy
Sus scrofa ENSSSCG000000229121 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000263632 retrocopies



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