RetrogeneDB ID: | retro_mputfur_944 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896977.1:5946619..5947316(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1G | ||
Ensembl ID: | ENSMPUG00000013942 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
Percent Identity: | 74.68 % |
Parental protein coverage: | 53.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVF |
MAAGT...YPE.WR..KALIAAQ..GAQV.VLS..P.FHF.QT.R.PEFL.K.PAGK.PAFEGDDGFCVF | |
Retrocopy | MAAGTVFMYPETWRTVKALIAAQSRGAQVCVLSTLPDFHFSQTKRSPEFLCKCPAGKLPAFEGDDGFCVF |
Parental | ESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILG |
.S.AIA.YVSNEEL.GS.PE..AQ.VQ.VS.ADSDIV.P.S..V.PT.GIMHHNKQA.ENAKEE....LG | |
Retrocopy | DSDAIA*YVSNEELWGSSPETTAQEVQCVSLADSDIVLPTSSRVGPTSGIMHHNKQAPENAKEEAKQLLG |
Parental | LLDAHLKTRTFLV-GERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKL |
LLDA.LKTRT.LV.....TLADIT.VCTLLWL.KQVLEPS..QAFPNTN..FLTC..QPQFRAVLGEVKL | |
Retrocopy | LLDAPLKTRTLLV>SPVLTLADITIVCTLLWL*KQVLEPSLCQAFPNTNCCFLTCVDQPQFRAVLGEVKL |
Parental | CEKMAQFDAKKFAESQPKKDTPR |
CEKMAQ..AKKFAESQP.KD..R | |
Retrocopy | CEKMAQSVAKKFAESQPEKDISR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006745 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015834 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000018949 | 6 retrocopies | |
Equus caballus | ENSECAG00000014334 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000014700 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003339 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007691 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013942 | 2 retrocopies |
retro_mputfur_427, retro_mputfur_944 ,
|
Nomascus leucogenys | ENSNLEG00000003528 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020959 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000029434 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000003768 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020075 | 8 retrocopies |