RetrogeneDB ID: | retro_pabe_2237 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:106121848..106122519(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1G | ||
Ensembl ID: | ENSPPYG00000029434 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
Percent Identity: | 76.89 % |
Parental protein coverage: | 94.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRW |
M.HNK.ATE.AK.E.R.ILGLL.A.LK.RTFLVGE.V.LADITVVC.LL.LYKQVLE.SF.QAFPNTNRW | |
Retrocopy | MQHNKKATESAKKELR*ILGLLHAHLKMRTFLVGEQVPLADITVVCMLL*LYKQVLEASFHQAFPNTNRW |
Parental | FLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAETQPKKDTPRKEKGSREEKQKPQAERKEEKKAAAPAPE |
FLTCINQPQF..V.GEV.LCE.MAQFDAKKFAE..PK.DTP.K.K.S..EKQKPQAE.KE.KKAA.PA.E | |
Retrocopy | FLTCINQPQFQVVCGEVNLCENMAQFDAKKFAESHPKQDTPWKRKCSQKEKQKPQAEQKEDKKAAVPASE |
Parental | EEMDECEQALAAEPKAKDPFAHLP-KSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFP |
EEMDECEQ.LAAEPKAKDPF...P.KSTFVLD.F...YS.EDTLSV.LPYFWE...KD.W.LW.SEY.F. | |
Retrocopy | EEMDECEQVLAAEPKAKDPFTYHP<KSTFVLDKFQCRYSKEDTLSVVLPYFWEQLNKDDWFLWFSEYHFL |
Parental | EELTQTFMSCNLITG |
EELTQ.FMSCNLITG | |
Retrocopy | EELTQIFMSCNLITG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 205 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 127 .19 RPM |
SRP007412_heart | 0 .03 RPM | 351 .76 RPM |
SRP007412_kidney | 0 .00 RPM | 555 .94 RPM |
SRP007412_liver | 0 .00 RPM | 381 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2778 |
Pan troglodytes | retro_ptro_1879 |
Macaca mulatta | retro_mmul_1447 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006745 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015834 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000018949 | 6 retrocopies | |
Equus caballus | ENSECAG00000014334 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000014700 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003339 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007691 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013942 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003528 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020959 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000029434 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000003768 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020075 | 8 retrocopies |