RetrogeneDB ID: | retro_nleu_593 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397268.1:24134091..24135180(+) | ||
Located in intron of: | ENSNLEG00000005278 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT7 | ||
Ensembl ID: | ENSNLEG00000017758 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.34 % |
Parental protein coverage: | 78.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LGSSSLYGLGASRPRVAVRSAYGGPVG-AGIREVTINQSLLAPLRLDADPSLQRVRQEEREQIKTLNNKF |
..SSSL.....S..R......YGG..G..GI..VT.NQSLL.P..L..DP..Q.....E.EQIKTLNNKF | |
Retrocopy | ISSSSLSRVSSSSFRSGLGGGYGGASGIGGITVVTFNQSLLSPVNLEVDPNIQAIYTQEKEQIKTLNNKF |
Parental | ASFIDKVRFLEQQNKLLETKWTLLQEQKSAKSSRLPDIFEALIAGLRGQLEALQVDG-GRLEAELRSMQD |
AS.IDK..FL.QQNK.LETKW.LLQ.Q...K..R....FE.....LR.QLE.L.......LEAEL..MQ. | |
Retrocopy | ASIIDKAWFLQQQNKMLETKWSLLQQQ---KMARI-NMFESYMNNLRWQLEVLGQEK<AELEAELGNMQG |
Parental | VVEDFKN-KYEDEINRRAAAENEFVVLKKDVDAAYMGKVELEAKVDALNDEINFLRTLNETELTELQSQI |
.VEDFK..KYEDEIN.R...ENEFV..KKDVD.AYM.KVELE.....L..EIN.LR.L.E.E..ELQSQI | |
Retrocopy | LVEDFKK<KYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESCLEGLTEEINSLRQLDEEEIQELQSQI |
Parental | SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEMAKCSRAEAEAWYQTKFETLQAQAGKHGDDLRNTRNEISE |
..TS.VLSMDNSRSLD.D.IIAEVKAQ.EE.A..S.AEAE..YQ.K...LQ..AGKH.DDL..T..EISE | |
Retrocopy | LGTSAVLSMDNSRSLDMDSIIAEVKAQCEEIANRSWAEAESMYQIKYVELQTLAGKHRDDLQRTKTEISE |
Parental | MNRAI-QRLQAEIDNIKNQRAKLEAAIAEAEERGELALKDARAKQEELEAALQRAKQDMARQLREYQELM |
MN..I.QRLQAEI...K.QRA.LEA.IA.AE.RGELA.KDA.AK..EL.A.LQRAKQDMARQLREYQ.LM | |
Retrocopy | MNQNI<QRLQAEIEGLKGQRASLEAPIADAEQRGELAVKDANAKLSELQATLQRAKQDMARQLREYQDLM |
Parental | SVKLALDIEIATYRKLLEGEE |
.VKLALD.EIATYRKL.EGEE | |
Retrocopy | NVKLALDMEIATYRKLREGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017950 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017733 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017740 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017746 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017748 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017753 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017758 | 2 retrocopies |
retro_nleu_593 , retro_nleu_726,
|
Nomascus leucogenys | ENSNLEG00000026579 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002820 | 2 retrocopies |