RetrogeneDB ID:

retro_nleu_778

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397273.1:4809669..4810386(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000018640
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PDCL3
Ensembl ID:ENSNLEG00000014393
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_778
ATGCAGGACCCCAACGCAGACACTGAGTGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCTAAGGAAGGTCTGAA
AGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCGCATCCTCCAGCAGTCAGTGGTGAAAACATATGCAGATATGACTTTGG
AAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACGGCAGAGACTGGCT
GGGTGGAAAGCAACTGAACTGAAGAACAAATTTGGAAAAGTTCTGGAAATCCCAGGGAAGGATTATGTTCAAGAAGTTAC
CAAAGCTGGTGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACC
TCAGTGGACTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGAT
AGGAATCTGCCCAAGATATTTGTTTACCTGGAAGGAGATATCGAGGCTCAGTTTCTTGGTCCTCTGGTGTTTGGCAGCAT
GAACCTGACAAGAGATGAGCTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACGGACCTGGAGGAAAACCCTGAGA
AGCCGATTGAAGACTTGCTGCTGTCCTCAGTGCGGCGCCCTGTCCTCATGAGGAGGGACAGCGATTCCGAGGGTGAC

ORF - retro_nleu_778 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.14 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERA
MQDPNADTEWNDILRKKGILPPKE.LKELEEEAEEEQRILQQSVVKTY.DMTLEELEDHEDEFNEEDERA
RetrocopyMQDPNADTEWNDILRKKGILPPKEGLKELEEEAEEEQRILQQSVVKTYADMTLEELEDHEDEFNEEDERA
ParentalIEMYRRQRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARK
IEMYRRQRLA.WKAT.LKNKFG.VLEI.GKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARK
RetrocopyIEMYRRQRLAGWKATELKNKFGKVLEIPGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARK
ParentalFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEE
FPDVKFIKAISTTCIPNYPDRNLP.IFVYLEGDI.AQF.GPLVFG.MNLTRDELEWKLSESGAIMTDLEE
RetrocopyFPDVKFIKAISTTCIPNYPDRNLPKIFVYLEGDIEAQFLGPLVFGSMNLTRDELEWKLSESGAIMTDLEE
ParentalNPKKPIEDVLLSSVRRSVLMRRHSDSEGD
NP.KPIED.LLSSVRR.VLMRR.SDSEGD
RetrocopyNPEKPIEDLLLSSVRRPVLMRRDSDSEGD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_778 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000022261 retrocopy
Callithrix jacchus ENSCJAG000000101603 retrocopies
Dipodomys ordii ENSDORG000000123971 retrocopy
Erinaceus europaeus ENSEEUG000000002241 retrocopy
Homo sapiens ENSG000001155397 retrocopies
Myotis lucifugus ENSMLUG000000164461 retrocopy
Monodelphis domestica ENSMODG000000014891 retrocopy
Mus musculus ENSMUSG000000260781 retrocopy
Nomascus leucogenys ENSNLEG00000014393 8 retrocopies
Oryctolagus cuniculus ENSOCUG000000014692 retrocopies
Otolemur garnettii ENSOGAG000000151382 retrocopies
Ochotona princeps ENSOPRG000000116002 retrocopies
Tursiops truncatus ENSTTRG000000062421 retrocopy



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