RetrogeneDB ID: | retro_ocun_920 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:62294385..62294949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCL3 | ||
Ensembl ID: | ENSOCUG00000001469 | ||
Aliases: | None | ||
Description: | phosducin-like 3 [Source:HGNC Symbol;Acc:28860] |
Percent Identity: | 59.79 % |
Parental protein coverage: | 78.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | KQAEEEEERALQQSVVKT-YEDMT-LEELEDNEDEFNEEDERAIEMYRQQRLAEWRATQEKNKFGEVLEI |
K..EEE.E..L.QSVVK..YE..T.LE..E.NE..F.EEDE..I.M.RQQRLAEWRA.Q.K.KFGE.L.I | |
Retrocopy | KEVEEEAEQVLHQSVVKC<YEHVT<LERSETNELKFKEEDELDIKMLRQQRLAEWRANQPKSKFGEILKI |
Parental | SGKDYVQEVTKAGEGLWVILHLYKQ-GIP-LCALINQ-HFSALARKFPDVKFIKAISTTCIPNYPDRNLP |
.GK..VQ........LWV..HL.K..G.P.LCALI...HF...ARK.PD.K.IKAI.TTC.P.YPDRN.P | |
Retrocopy | LGKEFVQDTI*IHKDLWVVCHLCKE>GFP>LCALIKH<HFCGPARKIPDMKYIKAILTTCVPSYPDRNPP |
Parental | TVFVY-LEGEIKAQFVGPLVFGGMNLTRDELEWKLAKSGAIKTDLEENPRKPIE |
T.F.Y.L.G..K..F.GPL.FGG..L.RDELEW..A.SG..K.DLEENP.KP.E | |
Retrocopy | TIFIY>LQGTHKVEFTGPLLFGGTDLRRDELEWEVAESGGMKKDLEENPKKPTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .79 RPM |
SRP017611_liver | 0 .00 RPM | 7 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010160 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000012397 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000224 | 1 retrocopy | |
Homo sapiens | ENSG00000115539 | 7 retrocopies | |
Myotis lucifugus | ENSMLUG00000016446 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001489 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026078 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014393 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001469 | 2 retrocopies |
retro_ocun_1035, retro_ocun_920 ,
|
Otolemur garnettii | ENSOGAG00000015138 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011600 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006242 | 1 retrocopy |