RetrogeneDB ID: | retro_dord_702 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_5829:41395..41951(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pdcl3 | ||
Ensembl ID: | ENSDORG00000012397 | ||
Aliases: | None | ||
Description: | phosducin-like 3 [Source:MGI Symbol;Acc:MGI:1916083] |
Percent Identity: | 90.43 % |
Parental protein coverage: | 78.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DPNADTEWNDILRKKGILPAKESLKELEKEAEEEEQRILQQSVVKTYEDMTLEELEENEDEFNEDDERAI |
DPNADTEWNDILR.KGIL.AKESLKELE.EAEEEEQRILQQSVVKTYEDMTLEELEENEDE.NE.DERAI | |
Retrocopy | DPNADTEWNDILRRKGILAAKESLKELEREAEEEEQRILQQSVVKTYEDMTLEELEENEDELNEEDERAI |
Parental | ELYKQRRLAEWKATQLKNK-FGEVLEISGKDYVQEVTKAGEGLWVV-LHLYKQGIPLCALINQHFNELAR |
ELYKQRRLAE.K.TQLKN..FGEVL..SGKDYVQEVTKAGEGLW.V.LHLYKQGI.LCALINQHFNELAR | |
Retrocopy | ELYKQRRLAEGKETQLKND<FGEVLKVSGKDYVQEVTKAGEGLWIV<LHLYKQGILLCALINQHFNELAR |
Parental | KFPDVKFIKAISTTCIPNYPDRNLPTIFVYRGGDIKAQFIGPLVFGGM |
KFPDVKFIK.ISTTCIPNYPDRNLPTIFV..GGDIKAQFIGPLVF.GM | |
Retrocopy | KFPDVKFIKVISTTCIPNYPDRNLPTIFVFLGGDIKAQFIGPLVFRGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010160 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000012397 | 1 retrocopy |
retro_dord_702 ,
|
Erinaceus europaeus | ENSEEUG00000000224 | 1 retrocopy | |
Homo sapiens | ENSG00000115539 | 7 retrocopies | |
Myotis lucifugus | ENSMLUG00000016446 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001489 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026078 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014393 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001469 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015138 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011600 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006242 | 1 retrocopy |