Parental gene:

Pdcl3, ENSMUSG00000026078

Aliases:Pdcl3, 1110061A19Rik, C80025, Viaf1
Description:phosducin-like 3 [Source:MGI Symbol;Acc:MGI:1916083]
Organism:Mouse (Mus musculus)
Coordinates:1:38987813..38997236(+)


>ENSMUSG00000026078
ATGCAGGACCCCAATGCAGACACCGAGTGGAATGACATCCTACGTAAAAAGGGCATCCTTCCCCCGAAGGAGAGCCTGAA
GGAGCTGGAGGAGGAGGAGGCGGAGAAGGAGGAGCAGCTCCTCCAGCAGTCAGTGGTGAAAACATACGAGGACATGACTC
TGGAAGAGCTGGAGGAGAACGAGGATGAGTTCAGTGAGGAGGATGAACGAGCTATCGAGATGTACCGGCAACAGAGGTTG
GCTGAGTGGAAAGCAACTCAGCTGAAGAACAAATTTGGAGAAGTTTTAGAGATCTCAGGAAAGGACTATGTTCAAGAAGT
TACGAAAGCCGGCGAGGGCCTGTGGGTGATCTTACACCTGTACAAACAAGGGATTCCCCTCTGTTCCTTGATAAACCATC
ACTTGAGTGGACTCGCCAGGAAGTTTCCCGATGTGAAATTTATCAAAGCCATTTCAACGACCTGCATACCCAACTACCCC
GACAGGAATCTCCCCACGGTGTTCGTCTACCGGGAAGGGGATATCAAGGCACAGTTCATTGGTCCTCTGGTGTTCGGTGG
CATGAACCTGACCATAGACGAGTTGGAGTGGAAACTGTCTGAGTCAGGAGCGATCAAGACAGCCCTGGAGGAGAACCCCA
AGAAGCCCATCCAGGACCTGCTGCTGTCCTCAGTCCGGGGCCCTGTCCCCATGAGGAGGGACAGTGATTCTGAGGACGAC
TAA

Library Parental gene expression (RPM)
SRP007412_brain 18 .08 RPM
SRP007412_cerebellum 30 .00 RPM
SRP007412_heart 52 .55 RPM
SRP007412_kidney 50 .38 RPM
SRP007412_liver 18 .13 RPM
SRP007412_testis 6 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002226 ortholog_one2one 1 retrogene
retro_cfam_1740,
Callithrix jacchus ENSCJAG00000010160 ortholog_one2one 3 retrogenes
retro_cjac_1486, retro_cjac_1599, retro_cjac_2055,
Dipodomys ordii ENSDORG00000012397 ortholog_one2one 1 retrogene
retro_dord_702,
Erinaceus europaeus ENSEEUG00000000224 ortholog_one2one 1 retrogene
retro_eeur_506,
Homo sapiens ENSG00000115539 ortholog_one2one 7 retrogenes
retro_hsap_1132, retro_hsap_151, retro_hsap_2684, retro_hsap_2757, retro_hsap_3535, retro_hsap_3961, retro_hsap_4102,
Myotis lucifugus ENSMLUG00000016446 ortholog_one2one 1 retrogene
retro_mluc_1443,
Monodelphis domestica ENSMODG00000001489 ortholog_one2one 1 retrogene
retro_mdom_734,
Nomascus leucogenys ENSNLEG00000014393 ortholog_one2one 8 retrogenes
retro_nleu_1499, retro_nleu_1575, retro_nleu_2741, retro_nleu_2891, retro_nleu_538, retro_nleu_571, retro_nleu_778, retro_nleu_926,
Oryctolagus cuniculus ENSOCUG00000001469 ortholog_one2one 2 retrogenes
retro_ocun_1035, retro_ocun_920,
Otolemur garnettii ENSOGAG00000015138 ortholog_one2one 2 retrogenes
retro_ogar_1147, retro_ogar_2959,
Ochotona princeps ENSOPRG00000011600 ortholog_one2one 2 retrogenes
retro_opri_1070, retro_opri_289,
Tursiops truncatus ENSTTRG00000006242 ortholog_one2one 1 retrogene
retro_ttru_1184,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2284 82.06 91.67
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Download FASTA sequences of all ENSMUSG00000026078 retrocopies