RetrogeneDB ID:

retro_nleu_831

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397274.1:29935480..29935782(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CNEP1R1
Ensembl ID:ENSNLEG00000000727
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_831
CACATCTTTTGTTTATGGTCCACTGTGAGGCACTGGACAACAATTCTTAGAACCATGTTCATCCGTACAGCTGCTAGGCT
GGGAACTGGTTAATAATAGATCCCAAGACACAAAAGCGTTTTCATCCCTCATTATGAAATCATCTATTTTTCACTGGCTG
TTGCGGTTTGTTCTTGCTGGAATACATAAGAGGGTAGTAGCACCATTGATTTGAGCAGCTTGGTATCAAATTGTGTTTGC
AGATTACAATACACCCTGTGATGTAGGAAAATATAATTTTGAAGTCAAGGCCTTATGTCGAG

ORF - retro_nleu_831 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 50.91 %
Parental protein coverage: 74.65 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalYIHCLQPATGRWRMLLIVVSVCTATG-AWNWLI-DPETQKVSFFTSLWNHPFFTISCITLIGLFF-AGIH
.I.CL......W...L......TA...A.NWLI.DP.TQK..F..SL.NH.FFT..C....GLF..AGIH
RetrocopyHIFCLWSTVRHWTTILRTMFIRTAAR<AGNWLIIDPKTQK-RFHPSL*NHLFFTGCC----GLFL<AGIH
ParentalKRVVAPSIIAARCRTVLAEYNMSCDDTGK-LILKPRPHVQ
KRVVAP.I.AA....V.A.YN..C.D.GK..ILK.RP.V.
RetrocopyKRVVAPLI*AAWYQIVFADYNTPC-DVGK>IILKSRPYVE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_831 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000064911 retrocopy
Callithrix jacchus ENSCJAG000000019971 retrocopy
Cavia porcellus ENSCPOG000000127911 retrocopy
Erinaceus europaeus ENSEEUG000000057371 retrocopy
Felis catus ENSFCAG000000239361 retrocopy
Homo sapiens ENSG000002054231 retrocopy
Gorilla gorilla ENSGGOG000000252111 retrocopy
Loxodonta africana ENSLAFG000000125731 retrocopy
Myotis lucifugus ENSMLUG000000069002 retrocopies
Macaca mulatta ENSMMUG000000083653 retrocopies
Mustela putorius furoENSMPUG000000031091 retrocopy
Nomascus leucogenys ENSNLEG00000000727 2 retrocopies
retro_nleu_1341, retro_nleu_831 ,
Oryctolagus cuniculus ENSOCUG000000059231 retrocopy
Otolemur garnettii ENSOGAG000000156651 retrocopy
Pongo abelii ENSPPYG000000073353 retrocopies
Pan troglodytes ENSPTRG000000416821 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000011791 retrocopy



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