>retro_obra_20
ATGTGGGATGATGTGCATGCAGGGAAGAGCGGCGGCGTGCTGGAGGAGGACCCGGTGGGGAAGCTGAAGGTGTACGTGTA
CGAGATGCCCCGGAAGTACAACCTGAACCTGCTGGCGAAGGACAGCCGGTGCCTGCACCACATGTTCGCCGCCGAGATCT
TCATGCACCAGTTCCTCCTCTCCAGCGCCGTCAGGACGCTCGACCCGGAGGAGGCCGACTGGTTCTACACGCCGGCGTAC
ACCACCTGCGACCTCACGCCGCAGGGCTTCCCGCTCCCGTTCCGGGCGCCGCGCATCATGCGCAGCGCAGTCCACTACGT
CGCCACCACCTGGCCCTACTGGAACCGCACCGGCGGCGCCGACCACTTCTTCCTCGCGCCGCACGACTTCGGCGCCTGCT
TCCACTACCAGGAGGAGCGCGCCATCGAGCGCGGCGTCCTCCCCGTGCTCCGGCGGGCCACGCTGGTGCAGACGTTCGGG
CAGCGCAACCACCCGTGCCTCCAGGACGGCTCCATCACCATCCCGCCCTACGCCAACCCGCACAAGATGGAGGCGCACCT
CATCAGCCCGGCCACGCCGCGCTCCATCTTCGTCTACTTCCGGGGCCTCTTCTACGACATGGGCAACGACCCCGAGGGCG
GGTACTACGCCCGCGGCGCGCGCGCCGCCGTGTGGGAGAACTTCAAGGACAACCCGCTGTTCGACATCTCGACGGAGCAC
CCGGCGACGTACTACGAGGACATGCAGCGCGCCATCTTCTGCCTCTGCCCGCTTGGGTGGGCGCCCTGGAGCCCCCGCCT
GGTGGAGGCGGTGGTGTTCGGCTGCATCCCCGTCATCATCGCCGACGACATCGTGCTCCCCTTCGCCGACGCCATCCCCT
GGGAGCAGATCAGCGTGTTCGTCGCGGAGGAGGACGTGCCCAGGCTCGACTCCATCCTCGCCTCCATCCCGCTCGACGAC
GTCATCCGCAAGCAGCGCCTGCTGGCCAGCCCGGCCATGAAGCAGGCCGTGCTGTTCCACCAGCCGGCGAGGCCCGGCGA
CGCCTTCCACCAGATACTCAACGGCCTCGCGCGCAAGCTGCCGCACCGCAAGGACGTCTTCCTCGAGCCCGGCGACAGTG
GCGTCGACTGGAACCAGGGCCTCGAGAGCGACCTCAAGCCATGGTAG
ORF - retro_obra_20 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.22 % |
Parental protein coverage: |
92.48 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GSAGDVLEDDPVGRLKVYVYELPTKYNKKMVAKDSRCLSHMFAAEIFMHRFLLSSAIRTLNPEEADWFYT |
| G..G.VLE.DPVG.LKVYVYE.P.KYN....AKDSRCL.HMFAAEIFMH.FLLSSA.RTL.PEEADWFYT |
Retrocopy | GKSGGVLEEDPVGKLKVYVYEMPRKYNLNLLAKDSRCLHHMFAAEIFMHQFLLSSAVRTLDPEEADWFYT |
|
Parental | PVYTTCDLTPWGHPLPFKSPRIMRSAIQFISSHWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGIL |
| P.YTTCDLTP.G.PLPF..PRIMRSA.......WPYWNRT.GADHFF..PHDFGACFHYQEE.AIERG.L |
Retrocopy | PAYTTCDLTPQGFPLPFRAPRIMRSAVHYVATTWPYWNRTGGADHFFLAPHDFGACFHYQEERAIERGVL |
|
Parental | PLLRRATLVQTFGQKDHVCLKEGSITIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTANDPEGGYYA |
| P.LRRATLVQTFGQ..H.CL..GSITIPPYA.P.KM..HL..P.TPRSIFVYFRGLFYD..NDPEGGYYA |
Retrocopy | PVLRRATLVQTFGQRNHPCLQDGSITIPPYANPHKMEAHLISPATPRSIFVYFRGLFYDMGNDPEGGYYA |
|
Parental | RGARASVWENFKNNPLFDISTDHPPTYYEDMQRSIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLP |
| RGARA.VWENFK.NPLFDIST.HP.TYYEDMQR.IFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLP |
Retrocopy | RGARAAVWENFKDNPLFDISTEHPATYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLP |
|
Parental | FADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQILNGLG |
| FADAIPW..I.VFVAE.DVP.LD.IL.SIP.....RKQRLLA.P.MKQA.LF.QPA.PGDAFHQILNGL. |
Retrocopy | FADAIPWEQISVFVAEEDVPRLDSILASIPLDDVIRKQRLLASPAMKQAVLFHQPARPGDAFHQILNGLA |
|
Parental | RKLPHDKSVYLSPGQKLLNWTQGPVGDLKPW |
| RKLPH.K.V.L.PG.....W.QG...DLKPW |
Retrocopy | RKLPHRKDVFLEPGDSGVDWNQGLESDLKPW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza brachyantha was not studied using RNA-Seq expression data.
Oryza brachyantha was not studied using ChIP-Seq data.
Oryza brachyantha was not studied using EST data.
Oryza brachyantha was not studied using FANTOM5 data.
retro_obra_20 was not experimentally validated.
Retrocopy orthology:
Oryza brachyantha does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.