RetrogeneDB ID: | retro_ocun_1569 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018700:8563587..8564310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SYPL1 | ||
Ensembl ID: | ENSOCUG00000015127 | ||
Aliases: | None | ||
Description: | synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507] |
Percent Identity: | 82.72 % |
Parental protein coverage: | 93.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QRMSSFQINLNPLKEPLGFIKILELIASIFTFATCGGFKGKTEVLVNCPPEVTENKTITASFGYPFRLNH |
Q.MS.FQINLNPLKEPLGFIKI.E.I.SI.TFATCG.FKG.TEVLVNCPP.VT.NKTITASFGYPFRLN. | |
Retrocopy | QGMSPFQINLNPLKEPLGFIKIFEWIVSILTFATCGCFKGRTEVLVNCPPQVTDNKTITASFGYPFRLNQ |
Parental | ASFQAPPNVNVCGVSWDSHVLIGDYSSSAQFYVTFAVFVFLYCIATLLLYVGYTNLYRDSRKLPMVDFVI |
.SFQA.P.VNVC.VSW.SHVLIGDY.SSAQF.VTFAVFVFLYCIA.LLLYVGYTNLY.DS.KLPMVDFVI | |
Retrocopy | ESFQASPSVNVCSVSWESHVLIGDYTSSAQFCVTFAVFVFLYCIAALLLYVGYTNLY*DSCKLPMVDFVI |
Parental | TLVATFLWLVSTSAWAKALTDIKVSTGHSIVQELLPCQQKDVHCYFGSVTSMGSLNVSVIFGFLNMILWG |
TLVA.FLWLVSTS.WAKAL..IKVST.HS.VQELLPC.Q.DVHCYFGSVT.MGSLN.SVIFGFLNMILWG | |
Retrocopy | TLVANFLWLVSTSTWAKALMNIKVSTRHSSVQELLPCEQQDVHCYFGSVTNMGSLNISVIFGFLNMILWG |
Parental | GNAWFVYKETSLHSPSNTSTAHGQGGVPPPAGI |
G..WFVYKETSL.S..N..TAHGQG.V.P.A.I | |
Retrocopy | GSVWFVYKETSLNSQ*N--TAHGQGSVQPLAAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 130 .45 RPM |
SRP017611_liver | 0 .00 RPM | 29 .98 RPM |