Parental gene:

SYPL1, ENSOCUG00000015127

Aliases:None
Description:synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:7:42460343..42489452(-)


>ENSOCUG00000015127
ATGGCGTCCAACATCTACTTGGTTCTCCAGCGGATCAGCCTGCTCGGCCAGAGGATGTCCTCCTTCCAGATCAACCTCAA
CCCGCTCAAGGAGCCGCTCGGCTTCATCAAGATCCTCGAGTTGATTGCCTCCATCTTTACTTTTGCCACCTGTGGAGGTT
TTAAGGGCAAAACAGAGGTTCTAGTGAATTGTCCTCCTGAAGTTACTGAGAATAAAACTATTACAGCTAGTTTTGGTTAT
CCATTCAGATTGAATCATGCGTCATTTCAGGCACCTCCAAATGTAAATGTGTGTGGCGTAAGTTGGGATAGTCATGTTCT
CATAGGAGATTACTCTTCTTCGGCACAGTTCTATGTCACCTTTGCAGTCTTTGTGTTCTTGTACTGCATTGCCACCCTGC
TGCTGTATGTTGGTTACACGAACCTGTATCGAGATAGTCGCAAACTTCCCATGGTTGACTTTGTTATCACTCTTGTTGCC
ACCTTTTTGTGGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTTACAGATATTAAAGTATCCACTGGGCACAGTATTGT
TCAGGAACTTCTGCCTTGTCAACAGAAGGACGTGCATTGTTACTTTGGTTCTGTGACTAGTATGGGGTCCCTAAATGTAT
CTGTGATCTTTGGCTTTCTGAACATGATACTTTGGGGAGGAAATGCGTGGTTTGTATACAAGGAGACCAGTTTGCACAGT
CCATCAAATACTTCTACTGCCCACGGCCAAGGAGGGGTTCCACCTCCTGCTGGAATATAA

Library Parental gene expression (RPM)
SRP017611_liver 29 .98 RPM
SRP017611_kidney 130 .45 RPM
SRP017611_brain 37 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016176 ortholog_one2many 2 retrogenes
retro_cjac_1588, retro_cjac_2483,
Cavia porcellus ENSCPOG00000009221 ortholog_one2one 1 retrogene
retro_cpor_239,
Equus caballus ENSECAG00000009695 ortholog_one2one 1 retrogene
retro_ecab_340,
Homo sapiens ENSG00000008282 ortholog_one2one 1 retrogene
retro_hsap_1817,
Gorilla gorilla ENSGGOG00000006497 ortholog_one2one 1 retrogene
retro_ggor_1984,
Myotis lucifugus ENSMLUG00000014980 ortholog_one2one 3 retrogenes
retro_mluc_1884, retro_mluc_2083, retro_mluc_449,
Macaca mulatta ENSMMUG00000019593 ortholog_one2one 2 retrogenes
retro_mmul_1251, retro_mmul_1464,
Mus musculus ENSMUSG00000020570 ortholog_one2one 1 retrogene
retro_mmus_3470,
Nomascus leucogenys ENSNLEG00000008861 ortholog_one2one 1 retrogene
retro_nleu_2720,
Otolemur garnettii ENSOGAG00000008079 ortholog_one2one 2 retrogenes
retro_ogar_1970, retro_ogar_2520,
Ochotona princeps ENSOPRG00000006755 ortholog_one2one 2 retrogenes
retro_opri_210, retro_opri_448,
Pongo abelii ENSPPYG00000018292 ortholog_one2one 1 retrogene
retro_pabe_2370,
Pan troglodytes ENSPTRG00000019570 ortholog_one2one 2 retrogenes
retro_ptro_1173, retro_ptro_1939,
Rattus norvegicus ENSRNOG00000009856 ortholog_one2one 2 retrogenes
retro_rnor_2273, retro_rnor_2992,
Sorex araneus ENSSARG00000013935 ortholog_one2one 1 retrogene
retro_sara_450,
Ictidomys tridecemlineatus ENSSTOG00000020871 ortholog_one2one 1 retrogene
retro_itri_1243,
Tupaia belangeri ENSTBEG00000009095 ortholog_one2one 2 retrogenes
retro_tbel_2025, retro_tbel_2566,
Tarsius syrichta ENSTSYG00000013296 ortholog_one2one 2 retrogenes
retro_tsyr_1768, retro_tsyr_775,
Tursiops truncatus ENSTTRG00000002848 ortholog_one2one 1 retrogene
retro_ttru_661,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_331 72.09 66.02
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2. retro_ocun_1000 71.22 52.12
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3. retro_ocun_1569 82.72 93.82
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Download FASTA sequences of all ENSOCUG00000015127 retrocopies