Parental gene:

MMU.3197, ENSMMUG00000019593

Aliases:None
Description:synaptophysin-like protein 1 [Source:RefSeq peptide;Acc:NP_001253746]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:143507369..143529982(-)


>ENSMMUG00000019593
ATGGCGCCCAACATCTACTTGGTTCGCCAGCGGATCAGTCGACTTGGCCAGAGGATGTCCGGCTTCCAGATCAATCTCAA
CCCTCTCAAGGAGCCACTCGGCTTCATCAAGGTCCTCGAGTGGATTGCTTCTATCTTTGCTTTTGCCACCTGTGGAGGTT
TTAAGGGCCAAACAGAAATTCAAGTGAGTTGTCCTCCCACAATTACCGAGAATAAAACTATTACAGCTACTTTTGGTTAT
CCATTCAGGTTGAATGAGGCATCATTTCAGCCACCTCCAGGTGTAAACATATGTGATGTAAATTGGAAAAGTTACGTTCT
CATAGGCGATTACTCTTCTTCTGCACAATTCTATGTTACGTTTGCAGTGTTTGTGTTCTTGTACTGCATTGCTGCCCTTC
TGCTTTATGTTGGCTACACGAGTCTGTATCTGGATAGTCGTAAACTTCCTATGATTGACTTTGTTGTTACACTTGTTGCC
ACTTTTTTGTGGTTGGTGAGCACTTCTGCCTGGGCTAAAGCTCTGACAGATATTAAAATAGCTACCGGTCACAATATTGT
TCAGGAACTTTCGCCTTGTAAGAAGAAAGAAATACTGTGTTACTTTGGCTCTGTGACCAGTATGGGATCCCTAAATGTAT
CTGTGATCTTTGGCTTTCTGAATATGATACTTTGGGGAGGAAATGCTTGGTTTGTGTACAAGGAGACCAGCCTACACAGT
CCATCAAATACGTCTGCCCCTCATAGCCAAGGAGGTATTCCACCTCCTACCGGAATATAA

Library Parental gene expression (RPM)
SRP007412_brain 18 .38 RPM
SRP007412_brain_prefrontal_cortex 9 .44 RPM
SRP007412_cerebellum 15 .95 RPM
SRP007412_heart 31 .44 RPM
SRP007412_kidney 131 .10 RPM
SRP007412_liver 22 .25 RPM
SRP007412_testis 79 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016176 ortholog_one2many 2 retrogenes
retro_cjac_1588, retro_cjac_2483,
Cavia porcellus ENSCPOG00000009221 ortholog_one2one 1 retrogene
retro_cpor_239,
Equus caballus ENSECAG00000009695 ortholog_one2one 1 retrogene
retro_ecab_340,
Homo sapiens ENSG00000008282 ortholog_one2one 1 retrogene
retro_hsap_1817,
Gorilla gorilla ENSGGOG00000006497 ortholog_one2one 1 retrogene
retro_ggor_1984,
Myotis lucifugus ENSMLUG00000014980 ortholog_one2one 3 retrogenes
retro_mluc_1884, retro_mluc_2083, retro_mluc_449,
Mus musculus ENSMUSG00000020570 ortholog_one2one 1 retrogene
retro_mmus_3470,
Nomascus leucogenys ENSNLEG00000008861 ortholog_one2one 1 retrogene
retro_nleu_2720,
Oryctolagus cuniculus ENSOCUG00000015127 ortholog_one2one 3 retrogenes
retro_ocun_1000, retro_ocun_1569, retro_ocun_331,
Otolemur garnettii ENSOGAG00000008079 ortholog_one2one 2 retrogenes
retro_ogar_1970, retro_ogar_2520,
Ochotona princeps ENSOPRG00000006755 ortholog_one2one 2 retrogenes
retro_opri_210, retro_opri_448,
Pongo abelii ENSPPYG00000018292 ortholog_one2one 1 retrogene
retro_pabe_2370,
Pan troglodytes ENSPTRG00000019570 ortholog_one2one 2 retrogenes
retro_ptro_1173, retro_ptro_1939,
Rattus norvegicus ENSRNOG00000009856 ortholog_one2one 2 retrogenes
retro_rnor_2273, retro_rnor_2992,
Sorex araneus ENSSARG00000013935 ortholog_one2one 1 retrogene
retro_sara_450,
Ictidomys tridecemlineatus ENSSTOG00000020871 ortholog_one2one 1 retrogene
retro_itri_1243,
Tupaia belangeri ENSTBEG00000009095 ortholog_one2one 2 retrogenes
retro_tbel_2025, retro_tbel_2566,
Tarsius syrichta ENSTSYG00000013296 ortholog_one2one 2 retrogenes
retro_tsyr_1768, retro_tsyr_775,
Tursiops truncatus ENSTTRG00000002848 ortholog_one2one 1 retrogene
retro_ttru_661,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1251 68.71 58.51
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2. retro_mmul_1464 61.34 79.25
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Download FASTA sequences of all ENSMMUG00000019593 retrocopies