>retro_ocun_1857
GAGAGTCTCACGGTGGAAGGCAAGAGGGAAAAGAACAAAGTAGAGAGGTTGACAGTGCAAGTCTCTTCCTTACAAAGGGA
GCCATTTACAGTTGCACAAGGACAGGGGCAGGCACTTTGTGAAACTGAAAGGATGTATTTGTTTCTGAGTAAGAAGAAAG
CAGATAAAATTAGAAATCTACAAAAACTGCTTTACAATAGACCAGACACAGTGTCCTCATTGAAGAAGAATGTGGGTCAG
TTCAGAGGTTTTCCACTTGAAAATGGAAGTATTCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAGTTTAGAAATGCCAT
GTTAAAGAGCATCTGCATGGTTCTTGATTAGGAGAGGTCAGGTGTAAATAGTGAACGAGTGAAGAGGATCTTGAATTTCT
TATTGCATCCAAAGCCTTCTGGCAAACCATTGCCAAATTCTAGAAAGACTTCTAGCAAAGGCAAGAAGAAGGTGCGCAAC
AGCTCTGGAACAACAAGGAAGGCGAAGCAAACCAAATATCCTGAAATTCTGTCAGATGAGTCTAGTAGTGATGATGAAAA
GAAAAACAAGAGTCTTCAGAGGATGAAGGTAAAGAAAGTGAAGAGGAGCCATTGAAAAAGACTTCTAATAGAGAAAAACC
TAAACAGAAAGCTACTGCAAAAGTAAAATGTCTGTAAAAAGTGCTAATGTTAAGAAAGCAGACAGCAGCACTGCCAAGAA
GAATCAAGACAGTTCAAGAAAGAAAGTGAATCTGAGGATAGTTCAGATGATGAACCTTTAAGTAAAAAATTGAAGAAACC
ACCTACCGAAGAAGAGTTAAAGGAAACAGTAAAGAAATTATTGGCCAAATCTAACTTGGAGGAAGTCACAATGAAGCAGA
TTTGTAAAGAGGTATAGGAAAATTATCCTGCTTATGAGTTAACTGAAAGAAAAGATTTCATTAAAACAACCGTTAAAGAA
CTAATT
ORF - retro_ocun_1857 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.15 % |
Parental protein coverage: |
86.67 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | KSLIVEGKREKKKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGT |
| .SL.VEGKREK.KVERLT.QVSSLQREPFT.AQG.GQ.LCE.ER...FLSKKK.D..RNL.KLLYNRP.T |
Retrocopy | ESLTVEGKREKNKVERLTVQVSSLQREPFTVAQGQGQALCETERMYLFLSKKKADKIRNLQKLLYNRPDT |
|
Parental | VSSLKKNVGQFSGFPFEKGSIQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKPS |
| VSSLKKNVGQF.GFP.E.GSIQYKKKEEMLKKFRNAMLKSIC.VLD.ERSGVNSE.VKRILNFL.HPKPS |
Retrocopy | VSSLKKNVGQFRGFPLENGSIQYKKKEEMLKKFRNAMLKSICMVLD*ERSGVNSERVKRILNFLLHPKPS |
|
Parental | GKPLPKSKKTSSKGSKKERNSSGTTRKAKRTKYPEILSDESSSDEDEKKN-KEESSEDEDKESEEEPPKK |
| GKPLP.S.KTSSKG.KK.RNSSGTTRKAK.TKYPEILSDE..S..D..K..K.ESSEDE.KESEEEP.KK |
Retrocopy | GKPLPNSRKTSSKGKKKVRNSSGTTRKAKQTKYPEILSDE--SSSDDEKK<KQESSEDEGKESEEEPLKK |
|
Parental | TSKREKPKQKAVAK-SKKSVKSANVKKADSSTTKKNQNSS-KKESESEDSSDDEPLIKKLKKPPTDEELK |
| TS.REKPKQKA.AK.SK.SVKSANVKKADSST.KKNQ.SS.KKESESEDSSDDEPL.KKLKKPPT.EELK |
Retrocopy | TSNREKPKQKATAK<SKMSVKSANVKKADSSTAKKNQDSS<KKESESEDSSDDEPLSKKLKKPPTEEELK |
|
Parental | ETVKKLLANANLEEVTMKQICKEVYENYPAYDLTERKDFIKTTVKELI |
| ETVKKLLA..NLEEVTMKQICKEV.ENYPAY.LTERKDFIKTTVKELI |
Retrocopy | ETVKKLLAKSNLEEVTMKQICKEV*ENYPAYELTERKDFIKTTVKELI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .06 RPM |
89 .35 RPM |
SRP017611_kidney |
0 .00 RPM |
90 .71 RPM |
SRP017611_liver |
0 .00 RPM |
45 .86 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1857 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1857 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1857 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
8 retrocopies.