>retro_ocun_1930
GCGGTGACAGCAGCAGCGGGGACTGTGGAGGGGTCGGGGCTCCAGGCTGGCGTGGCGGCACCATCTTGTGCCCTGGACGG
GGCCCCTGGAGGCTTAGGGGGACTAAGGGAACAACCTGGAGTCTGACAAACCGGAACCTGGGGAGCTGTTGCCAGAGCCT
GAGCCCGAAGAGGTGACACCCAGGCCCTGCGCTCCCCCGGGAACTCTGGGTCCTGGGCCTGGCTCAGAGCCCGCCCTCCC
TCCCCCAGCAACCAAGAGGAGGAGGAATCCGGACTGGTCAAGGGTGACCCGGGGGACAGCGCCATTGAGGACCAGGAGTT
GGAAGCGATCAAAGCCAGAGTCAGGGAGATGGAAGAGGAAGCGGAGAAGCTAAAGGAGCTGCAGAACAAAGTGGAGAGGC
ATATGAATAGGAGTCCATCTCCAGGCGGTGCTGGCCCAGTGATCGTGTTTACTGAGGAGAGAATGGAGGCTGACGCCCAT
TCCATCTGTGTTGGCAATGTGAACTACGGTGCATCAGCGGAAGAGCTGGAAGCTCACTTTCATGGTTGTGATTTTGTCAA
CCATGTGACA
ORF - retro_ocun_1930 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.21 % |
Parental protein coverage: |
63. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | AAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAG-DYGNGLESEELEPGELLPEPEPEEEPPRPRAPPG |
| A..AA.G...G.G........A...A..GAPGG.G.D.GN.LES...EPGELLPEPEPEE..PRP.APPG |
Retrocopy | AVTAAAGTVEGSGLQAGVA--APSCALDGAPGGLG>D*GNNLESDKPEPGELLPEPEPEEVTPRPCAPPG |
|
Parental | T----PGPGPG-SGAPGNQEEEEEPGLVEGDPGDSAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQM |
| T....PG..P.....P.NQEEEE..GLV.GDPGDSAIED.ELEAIKARVREMEEEAEKLKELQN.VE..M |
Retrocopy | TLGPGPGSEPA<PPSPSNQEEEES-GLVKGDPGDSAIEDQELEAIKARVREMEEEAEKLKELQNKVERHM |
|
Parental | NMSPPPGNAGPVIMSIEERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT |
| N.SP.PG.AGPVI...EERMEADA.SI.VGNV.YGA.AEELEAHFHGC..VN.VT |
Retrocopy | NRSPSPGGAGPVIVFTEERMEADAHSICVGNVNYGASAEELEAHFHGCDFVNHVT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
94 .37 RPM |
SRP017611_kidney |
0 .00 RPM |
57 .77 RPM |
SRP017611_liver |
0 .00 RPM |
42 .70 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1930 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1930 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1930 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.