RetrogeneDB ID: | retro_ocun_311 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:138536076..138536427(+) | ||
Located in intron of: | ENSOCUG00000021262 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000005752 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GABARAP | ||
Ensembl ID: | ENSOCUG00000006997 | ||
Aliases: | None | ||
Description: | GABA(A) receptor-associated protein (GABARAP), mRNA [Source:RefSeq mRNA;Acc:NM_001082142] |
Percent Identity: | 97.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHL |
MKFVYKEEHPFEKRRSEGEKIRKKY.DRVPVIVEKAPKARIGD.DKKKYLVPSDLTVGQFYFLIRKRIHL | |
Retrocopy | MKFVYKEEHPFEKRRSEGEKIRKKYTDRVPVIVEKAPKARIGDMDKKKYLVPSDLTVGQFYFLIRKRIHL |
Parental | RAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL |
.AEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL | |
Retrocopy | QAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .39 RPM | 180 .74 RPM |
SRP017611_kidney | 0 .30 RPM | 317 .96 RPM |
SRP017611_liver | 0 .31 RPM | 108 .68 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000012473 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016655 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013770 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000744 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010545 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018567 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008049 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006997 | 1 retrocopy |
retro_ocun_311 ,
|
Oryctolagus cuniculus | ENSOCUG00000016834 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022970 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000007901 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000034115 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017417 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000017936 | 1 retrocopy | |
Drosophila melanogaster | FBgn0052672 | 1 retrocopy |