RetrogeneDB ID: | retro_ocun_672 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:126983006..126984428(-) | ||
Located in intron of: | ENSOCUG00000023797 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OXCT1 | ||
Ensembl ID: | ENSOCUG00000009231 | ||
Aliases: | None | ||
Description: | 3-oxoacid CoA transferase 1 [Source:HGNC Symbol;Acc:8527] |
Percent Identity: | 73.17 % |
Parental protein coverage: | 91.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FYADPVEAVKDIPDGATILVGGFGLCGIPENLIGALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRM |
FY.DPVE.VKDI.DGAT..VGGFGLCGIPENLI.ALL.T.V..L...S.N.GVD.FGLGLLL..KQI.R. | |
Retrocopy | FYTDPVEMVKDISDGATVMVGGFGLCGIPENLIAALLRTRVRDLRVISSNVGVDDFGLGLLLATKQIRRI |
Parental | VSSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIA |
V.SY.GENA..ERQ.L.GELE.ELTPQGTLAER..........FYT.T.YGTLVQEGG.PI.Y..DG..A | |
Retrocopy | VCSYLGENALCERQYLAGELELELTPQGTLAERXXXXXXXXXXFYTPTAYGTLVQEGGAPIRYYPDGHLA |
Parental | IASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDI |
I.S.PREVREF.G.H..LE.A...DFALVK.WKADRAGNV.FR.SARNFN.PMCKAA....VEVEEIVD. | |
Retrocopy | IRSQPREVREFEGRHYLLERALRADFALVKGWKADRAGNVVFRGSARNFNAPMCKAADVAAVEVEEIVDV |
Parental | GSFAPEDIHIPKIYVHRLIKGEKYEKRIERLSIRKEGDGKAKSTQAGDNVRERIIRRAALEFEDGMYANL |
G.F.PEDIH.P.IYV.R.IKG...EKRIERL..R.E....A....AG.N.R.RI..RAALEFEDGMYA.L | |
Retrocopy | GAFRPEDIHVPNIYVDRVIKGRAFEKRIERLTVRPE---VAAGACAGANARTRIVKRAALEFEDGMYASL |
Parental | GIGIPLLASNFISPNMTVHLQSENGVLGLGPYPLQHEADADLINAGKETVTVLPGASFFSSDESFAMIRG |
GIGIPLLASNFI.P..TVHL.SENG.LGLGP.P...EADAD.INAGK.TVTVLPG.SFFSSD.SFAMIRG | |
Retrocopy | GIGIPLLASNFIRPGVTVHLHSENGILGLGPFPTRGEADADVINAGKQTVTVLPGGSFFSSDDSFAMIRG |
Parental | GHVNLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLT |
GH..LTMLGAMQVSKYGDLANWMIPGK.VKG.GGAMDLVSS.KTKVVVTMEH..K....KI..KC..PLT | |
Retrocopy | GHIQLTMLGAMQVSKYGDLANWMIPGKKVKGKGGAMDLVSSDKTKVVVTMEHCTKDKSPKILDKCSMPLT |
Parental | GKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVEDIQKSTGCDFAVSPKLMPMQQI |
GKQCV.RIITEKAVFDV.KK.GLTLIELWEGLTV.D.Q.STGC.FAVSP.L.PMQQ. | |
Retrocopy | GKQCVDRIITEKAVFDVHKKRGLTLIELWEGLTVTDVQNSTGCAFAVSPNLRPMQQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .33 RPM | 59 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 487 .83 RPM |
SRP017611_liver | 0 .00 RPM | 4 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_478 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000033186 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000016318 | 1 retrocopy | |
Equus caballus | ENSECAG00000018312 | 1 retrocopy | |
Homo sapiens | ENSG00000083720 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025087 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009431 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016656 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009231 | 1 retrocopy |
retro_ocun_672 ,
|
Otolemur garnettii | ENSOGAG00000009909 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015428 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016829 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000043094 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008271 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013641 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004331 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000002550 | 1 retrocopy |