RetrogeneDB ID: | retro_ttru_875 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_436:214199..215310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTTRG00000014400 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OXCT1 | ||
Ensembl ID: | ENSTTRG00000004331 | ||
Aliases: | None | ||
Description: | 3-oxoacid CoA transferase 1 [Source:HGNC Symbol;Acc:8527] |
Percent Identity: | 70.05 % |
Parental protein coverage: | 71.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGG-AGVPAFYTSTGYGTLVQEGGSPIKYNKDGS |
.V.SY..EN...E..YL.GELE.E.TPQGTLAERIRAGG.AGVPAF...T..GTL.QEGG.P.K...DG. | |
Retrocopy | IVCSYLVENSLCEHRYLAGELELEITPQGTLAERIRAGG>AGVPAFHIPTACGTLAQEGGTPSKSLEDGH |
Parental | IAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIV |
IAI.S.PREVREF.GQH..LE...T..FALVK.WKADRAGNVIFR.SARNFN.PMCKAA.T.VVE.EEIV | |
Retrocopy | IAILSQPREVREFHGQHYLLEHDVTAGFALVKGWKADRAGNVIFRASARNFNVPMCKAARTSVVEIEEIV |
Parental | DIGSFAPEDIHIPKIYVHRLIKGEKYEKRIERLSIRKEEDVKTTSGKPGDNVRERIIKRAALEFEDGMYA |
D.G.FAPEDIH.P.IY..R.I.G.KYEKR.ERL..R..ED......K..D..R.RI.K.AAL.FEDG..A | |
Retrocopy | DLGPFAPEDIHVPNIYLDRGIQGGKYEKRNERLTMR-KEDDEIC--KSADSIRTRILKQAALDFEDGLCA |
Parental | NLGIGIPLLASNFISPSMTVHLQSENGVLGLGPYPLKNEVDADLINAGKETVTVLPGASYFSSDESFAMI |
.LGIGIPLLA...ISP..TVHL.SENG.LGLGP.PLK.EVDADL.NAGK.TV..LPG...FSSDESFAMI | |
Retrocopy | SLGIGIPLLATSYISPTITVHLHSENGILGLGPFPLKEEVDADLNNAGKHTVILLPGGCFFSSDESFAMI |
Parental | RGGHVNLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLP |
RGGH..LT.LGAMQVSKYGDLANWMIPGK.VKGMGGAMDLVSS..T.V.VTMEHS.K.....I.EKCT.P | |
Retrocopy | RGGHIDLTLLGAMQVSKYGDLANWMIPGKKVKGMGGAMDLVSSTETRVMVTMEHSTKASEPRILEKCTMP |
Parental | LTGKQCVNRIITEKAVFDVDNKKG |
L.GK.CV..IITEKAVFD...K.G | |
Retrocopy | LNGKRCVD*IITEKAVFDMHRKGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000033186 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000016318 | 1 retrocopy | |
Equus caballus | ENSECAG00000018312 | 1 retrocopy | |
Homo sapiens | ENSG00000083720 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025087 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009431 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016656 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009231 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009909 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015428 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016829 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000043094 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008271 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013641 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004331 | 1 retrocopy |
retro_ttru_875 ,
|
Vicugna pacos | ENSVPAG00000002550 | 1 retrocopy |