Parental gene:

OXCT1, ENSECAG00000018312

Aliases:None
Description:Succinyl-CoA:3-ketoacid-coenzyme A transferase [Source:UniProtKB/TrEMBL;Acc:F7A396]
Organism:Horse (Equus caballus)
Coordinates:21:24524678..24651408(+)


>ENSECAG00000018312
ATGGCGGCTCTCAAACTCCTGTCCTCCTGGCAACGGCCCTGGGCCTCCGCGCGCGGCTCCGGGGGCGCCTGGCTCAAGGG
ATGTGTTTGCTACTTTTCAACCAGCACACGTCACCATACCAAATTTTATACCGATCCAGTGGAAGCCGTAAAAGACATCC
CTGATGGAGCAACGGTACTGGTTGGTGGTTTTGGTTTATGTGGAATTCCAGAGAACCTTATAGGAGCTTTACTAAAGACT
GGAGTAAAAGGATTAACTGCAGTTAGCAACAATGCAGGGGTTGACAACTTTGGCTTGGGCCTTTTACTTCGATCCAAGCA
GATAAAACGCATGGTCTCTTCGTACGTGGGAGAAAATGCAGAATTTGAACGGCAGTACTTAGCTGGTGAGTTAGAAGTAG
AGCTGACACCTCAGGGCACACTTGCAGAGAGGATTCGTGCAGGTGGGGCTGGCGTTCCTGCGTTTTACACCAGCACAGGG
TATGGGACCCTGGTGCAAGAAGGAGGGTCACCTATCAAATACAACACAGATGGCAGCATTGCCATTGCCAGCAAGCCAAG
AGAGGTGAGAGAGTTTAATGGTCAAAATTTTATTTTGGAGGAAGCAATTACAGGGGATTTTGCTTTGGTGAAAGCCTGGA
AGGCAGACCGAGCTGGAAACGTCATTTTCAGGAAAAGTGCCAGGAATTTCAACTTGCCCATGTGCAAAGCTGCAGAAACC
ACAGTGGTGGAGGTTGAAGAAATTGTGGATATTGGATCATTTGCCCCAGAAGACATTCATATTCCTAAGATTTATGTACA
TCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAGTCCGGAAAGAGGGAGATGTAAAAGCCAAAT
CTGGGAAACCTGGAGATAACGTGAGGGAACGTATCATCAAGCGGGCAGCTCTTGAATTTGAGGACGGCATGTATGCTAAT
TTGGGCATAGGAATCCCTCTTCTGGCGAGTAACTTTATCAGCCCGGATATGACTGTTCATCTTCAAAGTGAAAATGGAAT
CCTGGGTTTGGGTCCATATCCGTTACAAAATGAAGTTGATCCAGATCTAATCAATGCAGGCAAGGAAACAGTTACTGTTC
TTCCAGGAGCTGCTTATTTCTCCAGCGATGAGTCATTTGCGATGATTAGAGGGGGACATGTCAATCTAACAATGCTAGGA
GCAATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCTGGGAAGATGGTGAAAGGAATGGGAGGTGCTAT
GGATCTCGTGTCAAGTGCCAGAACCAAAGTGGTGGTCACCATGGAGCATTCTGCAAAGGGAAATACACATAAAATCTTGG
AGAAATGTACATTACCACTGACTGGAAAGCAATGTGTCAATCGCATCATTACTGAAAAGGCTGTGTTTGATGTGGACAAC
AAGAAAGGGCTGACTCTGATTGAACTCTGGGAAGGCCTGACAGTGGATGACATAAAAAAGAGCACTGGGTGTGATTTTGC
AGTTTCACCAAAACTCATGCCAATGCGACAGATCGTAACTTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 42 .74 RPM
SRP021940_cerebellum 17 .24 RPM
SRP021940_embryo 24 .75 RPM
SRP021940_placental_villous 7 .46 RPM
SRP021940_synovial_membrane 21 .96 RPM
SRP021940_testis 5 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033186 ortholog_one2one 2 retrogenes
retro_btau_1243, retro_btau_1302,
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Homo sapiens ENSG00000083720 ortholog_one2one 1 retrogene
retro_hsap_14,
Gorilla gorilla ENSGGOG00000025087 ortholog_one2one 1 retrogene
retro_ggor_378,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pongo abelii ENSPPYG00000015428 ortholog_one2one 2 retrogenes
retro_pabe_336, retro_pabe_478,
Pan troglodytes ENSPTRG00000016829 ortholog_one2one 1 retrogene
retro_ptro_140,
Rattus norvegicus ENSRNOG00000043094 ortholog_one2one 2 retrogenes
retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_511 74.13 99.62
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Download FASTA sequences of all ENSECAG00000018312 retrocopies