RetrogeneDB ID: | retro_ocun_678 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:1229247..1229895(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSOCUG00000009899 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] |
Percent Identity: | 67.87 % |
Parental protein coverage: | 87.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIV-KNYP-EGHKAAAVLPVLDLAQRQNGWLPISAMNK |
GAGGA..V.R.TPENNP.TPFD.T.EN.KR.EAIV.K..P.EGHKAAAVLPVLD.AQ.QN..LP..A... | |
Retrocopy | GAGGAVCVCRGTPENNPATPFDSTSENSKRTEAIV>KEKP>EGHKAAAVLPVLDSAQKQNE*LPTPAGKE |
Parental | VAEVLQ-VPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKL |
..EVL...PPMRV..VA..Y.M.N.K..G.KY.IQVCT..PC...NSDS.LEAIQKKLG.K.G...PDKL | |
Retrocopy | TVEVLP<EPPMRV*AVAMLYAMSNQKLIG<KYPIQVCTPAPCTHGNSDSKLEAIQKKLGQKLGKP-PDKL |
Parental | FTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPP |
..LIE.EC.G..VN.P.VQIN..Y.EDL..KD.EEIIDELKAGKIPKP.PR.G..SCEPAGGL.S.TEPP | |
Retrocopy | LALIELECPGPWVNTPVVQINTSY*EDLPSKDMEEIIDELKAGKIPKPAPRRGCLSCEPAGGLSSPTEPP |
Parental | KGPGFGVQAGL |
K.PGFGV.AGL | |
Retrocopy | KRPGFGVPAGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 87 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 97 .00 RPM |
SRP017611_liver | 0 .00 RPM | 23 .12 RPM |