RetrogeneDB ID:

retro_ttru_435

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2264:201046..201576(-)
Located in intron of:ENSTTRG00000013890
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFV2
Ensembl ID:ENSTTRG00000002426
Aliases:None
Description:NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717]


Retrocopy-Parental alignment summary:






>retro_ttru_435
AGAGATACTCCTGAGAATAACCCAGATACTCCATTTGATTTCACACCAGAAAACTATAAGAGGATAGAGGCCATTGTAAA
AAACTACCCAGAAGGGCATAAAGCAGCAGCTGTGCTTCCAGTCCTGGATTTAGCCCAAAGACAGAATGGATGGCTGCCCA
TCTCTGCTATGAACAAGGCTGCAAAAGTTATATAAATACCTCCAATGAGAGTATATGAAGTAGCAACTTTTTATACAATG
TATAATAGAGGGCCAGTTGAAAGTATCATATTCAAGTCTGCACTACTATACCTTGCATGCTTTGAAATTCTGACAGCATA
CTGGAGACTACTCAGAAAAAGCTTGGAATAAAGGTTGGGGAGACTACACCTGACAAACTTTTCACTCTTATAGAAGTGGA
ATGTTTAGGGGCCTGTGTAAATGCACCAATGATTCAAATAAATGACAACTACTATGAGGATCTGACACTTAAGGATACTG
AAGAAATTACTGATGAATCCAAAGCTGGCAAAATCCCAAAATCTGGGCCA

ORF - retro_ttru_435 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.33 %
Parental protein coverage: 99.44 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMR
RDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK.A.V...PPMR
RetrocopyRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKAAKVI*IPPMR
ParentalVYEVATFYTMYNRKPVG-KYHVQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
VYEVATFYTMYNR.PV..KYH.QVCTT.PCML.NSDSILE..QKKLGIKVGETTPDKLFTLIEVECLGAC
RetrocopyVYEVATFYTMYNRGPVE<KYHIQVCTTIPCML*NSDSILETTQKKLGIKVGETTPDKLFTLIEVECLGAC
ParentalVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGP
VNAPM.QINDNYYEDLT.KD.EEI.DE.KAGKIPK.GP
RetrocopyVNAPMIQINDNYYEDLTLKDTEEITDESKAGKIPKSGP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_435 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_435 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 46 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000074151 retrocopy
Bos taurus ENSBTAG000000048712 retrocopies
Choloepus hoffmanni ENSCHOG000000137141 retrocopy
Cavia porcellus ENSCPOG000000084794 retrocopies
Dasypus novemcinctus ENSDNOG000000170361 retrocopy
Dipodomys ordii ENSDORG000000081795 retrocopies
Erinaceus europaeus ENSEEUG000000068181 retrocopy
Homo sapiens ENSG000001781271 retrocopy
Loxodonta africana ENSLAFG000000105202 retrocopies
Macaca mulatta ENSMMUG000000220951 retrocopy
Mustela putorius furoENSMPUG000000047102 retrocopies
Oryctolagus cuniculus ENSOCUG000000098993 retrocopies
Otolemur garnettii ENSOGAG000000101182 retrocopies
Ochotona princeps ENSOPRG000000127882 retrocopies
Procavia capensis ENSPCAG000000062842 retrocopies
Rattus norvegicus ENSRNOG000000425031 retrocopy
Sorex araneus ENSSARG000000118762 retrocopies
Sus scrofa ENSSSCG000000036831 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000162591 retrocopy
Tupaia belangeri ENSTBEG000000154268 retrocopies
Tursiops truncatus ENSTTRG00000002426 3 retrocopies
retro_ttru_1543, retro_ttru_435 , retro_ttru_486,



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