RetrogeneDB ID: | retro_cpor_689 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_23:2372112..2372480(-) | ||
Located in intron of: | ENSCPOG00000026661 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSCPOG00000008479 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.03 % |
Parental protein coverage: | 51.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | RIEAIIKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKV-AEVLQVPPMRVYEVATFYTMYNRKPVGKY |
R.EAI.K..PEGHKA.AVLPVLD..QRQNG.LP.S..NK......Q.PP.R...............V.K. | |
Retrocopy | RTEAIVKHCPEGHKASAVLPVLDSVQRQNGRLPTSVTNKL<CRIFQAPPDRIHCMIVLHIQLEACTVFKW |
Parental | HIQVCTTTPCMLRDSDSILEAIQKKLGIKVG-ETTPDKLFT-LIEVECL-GACVNAPMVQIN |
....C...P..L..SDS.LEAIQK.L.IK.G.ETTPD.LF...IEV.CL.G.CVN..MVQ.N | |
Retrocopy | ----CLIAPLYLACSDSVLEAIQKELEIKPG<ETTPDQLFI<FIEVGCL<GTCVNMQMVQVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 128 .14 RPM |
SRP017611_liver | 0 .00 RPM | 57 .67 RPM |
SRP040447_lung | 0 .00 RPM | 50 .42 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 193 .75 RPM |