RetrogeneDB ID: | retro_ocun_713 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:99954335..99954824(+) | ||
Located in intron of: | ENSOCUG00000017082 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPF38A | ||
Ensembl ID: | ENSOCUG00000000963 | ||
Aliases: | None | ||
Description: | PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:HGNC Symbol;Acc:25930] |
Percent Identity: | 100. % |
Parental protein coverage: | 52.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRD |
ELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRD | |
Retrocopy | ELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRD |
Parental | LDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHR |
LDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHR | |
Retrocopy | LDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHR |
Parental | HRSHSKSPERSKKSHKKSRRGNE |
HRSHSKSPERSKKSHKKSRRGNE | |
Retrocopy | HRSHSKSPERSKKSHKKSRRGNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .28 RPM | 15 .01 RPM |
SRP017611_kidney | 0 .20 RPM | 21 .79 RPM |
SRP017611_liver | 0 .08 RPM | 4 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000021594 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013904 | 1 retrocopy | |
Homo sapiens | ENSG00000134748 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003940 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000025862 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001053 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000000644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063800 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017999 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000963 | 1 retrocopy |
retro_ocun_713 ,
|
Otolemur garnettii | ENSOGAG00000005423 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000005561 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001348 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000739 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009803 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003858 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015610 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000008995 | 3 retrocopies |