Parental gene:

PRPF38A, ENSG00000134748

Aliases:None
Description:PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:HGNC Symbol;Acc:25930]
Organism:Human (Homo sapiens)
Coordinates:1:52870235..52886511(+)


>ENSG00000134748
ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAAC
GCGAATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGT
TAAGGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATT
CAACCCGAGAAGGATATCATTGTAGAGTTTATCAAAAATGAAGATTTCAAGTATGTCCGCATGCTGGGGGCACTTTACAT
GAGGCTGACAGGCACTGCAATTGATTGCTACAAGTACTTGGAACCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGA
ACCGAAATGGGGAGTTTGAATTGATGCATGTTGATGAGTTTATTGATGAACTATTGCACAGTGAGAGAGTCTGTGATATC
ATTCTGCCCCGACTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAGGA
CATGGATGATGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGGAAAGAGTGCCATCACCTGATCACCGCC
GGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGGAGGAGTAGGAGCCGGTCTCCCAGA
AGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTCCCCTCGCCGAGAAAGGCATCGGAGCAAGAGTCCAAGACGTCACCG
CAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCCAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACT
CAAAGTCTCCCGAAAGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAA

Library Parental gene expression (RPM)
bodymap2_adipose 31 .49 RPM
bodymap2_adrenal 48 .66 RPM
bodymap2_brain 34 .76 RPM
bodymap2_breast 34 .73 RPM
bodymap2_colon 55 .59 RPM
bodymap2_heart 15 .19 RPM
bodymap2_kidney 47 .26 RPM
bodymap2_liver 12 .76 RPM
bodymap2_lung 32 .86 RPM
bodymap2_lymph_node 57 .51 RPM
bodymap2_ovary 117 .88 RPM
bodymap2_prostate 58 .70 RPM
bodymap2_skeletal_muscle 14 .30 RPM
bodymap2_testis 76 .20 RPM
bodymap2_thyroid 65 .80 RPM
bodymap2_white_blood_cells 80 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000021594 ortholog_one2one 1 retrogene
retro_cjac_2862,
Dasypus novemcinctus ENSDNOG00000013904 ortholog_one2one 1 retrogene
retro_dnov_443,
Gorilla gorilla ENSGGOG00000003940 ortholog_one2one 4 retrogenes
retro_ggor_493, retro_ggor_494, retro_ggor_496, retro_ggor_563,
Loxodonta africana ENSLAFG00000025862 ortholog_one2one 1 retrogene
retro_lafr_794,
Myotis lucifugus ENSMLUG00000001053 ortholog_one2one 8 retrogenes
retro_mluc_1105, retro_mluc_1208, retro_mluc_1856, retro_mluc_2016, retro_mluc_2150, retro_mluc_2405, retro_mluc_2576, retro_mluc_828,
Monodelphis domestica ENSMODG00000000644 ortholog_one2many 1 retrogene
retro_mdom_184,
Mus musculus ENSMUSG00000063800 ortholog_one2one 2 retrogenes
retro_mmus_1227, retro_mmus_671,
Nomascus leucogenys ENSNLEG00000017999 ortholog_one2one 2 retrogenes
retro_nleu_715, retro_nleu_719,
Oryctolagus cuniculus ENSOCUG00000000963 ortholog_one2one 1 retrogene
retro_ocun_713,
Otolemur garnettii ENSOGAG00000005423 ortholog_one2one 1 retrogene
retro_ogar_3216,
Petromyzon marinus ENSPMAG00000005561 ortholog_one2one 1 retrogene
retro_pmar_28,
Pongo abelii ENSPPYG00000001348 ortholog_one2one 2 retrogenes
retro_pabe_500, retro_pabe_503,
Pan troglodytes ENSPTRG00000000739 ortholog_one2one 2 retrogenes
retro_ptro_406, retro_ptro_410,
Pteropus vampyrus ENSPVAG00000009803 ortholog_one2one 1 retrogene
retro_pvam_967,
Sus scrofa ENSSSCG00000003858 ortholog_one2one 1 retrogene
retro_sscr_924,
Ictidomys tridecemlineatus ENSSTOG00000015610 ortholog_one2many 1 retrogene
retro_itri_1564,
Taeniopygia guttata ENSTGUG00000008995 ortholog_one2one 3 retrogenes
retro_tgut_12, retro_tgut_13, retro_tgut_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_541 85.62 100.00
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2. retro_hsap_545 89.87 50.32
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Download FASTA sequences of all ENSG00000134748 retrocopies