RetrogeneDB ID: | retro_tgut_13 | ||
Retrocopylocation | Organism: | Zebrafinch (Taeniopygia guttata) | |
Coordinates: | 1:10321819..10322538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPF38A | ||
Ensembl ID: | ENSTGUG00000008995 | ||
Aliases: | None | ||
Description: | PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:HGNC Symbol;Acc:25930] |
Percent Identity: | 62.3 % |
Parental protein coverage: | 78.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | LVVDKAMELKYVG-GVYGGNIKPTPF-LCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTA |
LV.DKAMEL...G.GVYGG........LCL.LKMLQIQP.K.I.VEF.KNED.K.V.MLG...MRL.GTA | |
Retrocopy | LVLDKAMELECMG<GVYGGXXXXXXXXLCLMLKMLQIQPKKGITVEFLKNEDVKDVQMLGEVSMRLAGTA |
Parental | IDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHEERVCDIILPRLQKRYVLEEAEQLEPRVSA |
ID.Y.YLEPL..D...IK.Q.R.G..E.MH.DEF.DELLHEERVC..ILP.LQK..VLE.AEQL.PRVSA | |
Retrocopy | IDGYRYLEPLNSDCWRIKHQDRKGGCEQMHRDEFSDELLHEERVCNVILPWLQK*HVLEGAEQLQPRVSA |
Parental | LEEDMDDVESSEEEEEE-DEKLERIPSPDHRRRGYRDLDKPRRSPVV-RYRRSRSRSPRRRSRSPKRR-S |
LEE...D....E...E..D.KLE.IPSPDH.RRG.RDLDK...S..V.R...SRS....R.S.SPKRR.S | |
Retrocopy | LEE---DMPDAESNQEK<DAKLE*IPSPDHCRRGQRDLDKQICSGAV>RWGWSRSAG--RHSCSPKRR<S |
Parental | PSPRRERHRSKSPRRHRSRS-RERRHRSRSK-SPGHHRSHRH |
PS...ERH.SKS.R.H.SRS..ER.HRSR...SP.H..SHRH | |
Retrocopy | PSLCQERHCSKSLRWHQSRS<LERQHRSRFN<SPAHDHSHRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000021594 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013904 | 1 retrocopy | |
Homo sapiens | ENSG00000134748 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003940 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000025862 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001053 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000000644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063800 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017999 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000963 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005423 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000005561 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001348 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000739 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009803 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003858 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015610 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000008995 | 3 retrocopies |
retro_tgut_12, retro_tgut_13 , retro_tgut_14,
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