RetrogeneDB ID: | retro_ocun_796 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:40157061..40157529(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSOCUG00000029552 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 95.51 % |
Parental protein coverage: | 84.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL |
MREYKLVVLGSGGVGKSALTVQFV.GIFVEKYDPTIEDSYRKQVEVD.QQCMLEIL.TAGTEQFTAMRDL | |
Retrocopy | MREYKLVVLGSGGVGKSALTVQFV*GIFVEKYDPTIEDSYRKQVEVDTQQCMLEILATAGTEQFTAMRDL |
Parental | YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN |
YMKNGQGFALVYSITAQSTFNDLQDLRE.ILRVKDTDDVPMILVGNKCDLED.RVVGKEQGQNLARQWNN | |
Retrocopy | YMKNGQGFALVYSITAQSTFNDLQDLRERILRVKDTDDVPMILVGNKCDLEDARVVGKEQGQNLARQWNN |
Parental | CAFLESSAKSKINVNE |
.AFLES.AKSKINVNE | |
Retrocopy | *AFLESPAKSKINVNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .32 RPM | 47 .19 RPM |
SRP017611_kidney | 2 .84 RPM | 67 .71 RPM |
SRP017611_liver | 0 .77 RPM | 20 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019724 | 18 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010052 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013148 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011442 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022455 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029552 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005197 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000007048 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies |