Parental gene:

RAP1B, ENSCPOG00000008272

Aliases:None
Description:RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:29939815..29946680(-)


>ENSCPOG00000008272
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCGGCTCTGACTGTACAGTTTGTTCAAGGCAT
TTTTGTTGAAAAATATGACCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCACAGCAGTGTATGCTTG
AAATTTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGAGATTTGTACATGAAAAATGGACAAGGCTTTGCTTTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCCATGATTCTGGTTGGTAATAAATGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAGAATC
TAGCAAGACAGTGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCCCGTAAAAAGTCATCATGTCAGCTGCTTTAA

Library Parental gene expression (RPM)
SRP017611_liver 23 .55 RPM
SRP017611_kidney 21 .36 RPM
SRP017611_brain 17 .49 RPM
SRP040447_lung 50 .06 RPM
SRP040447_skeletal_muscle 8 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 possible_ortholog 1 retrogene
retro_amel_103,
Bos taurus ENSBTAG00000008967 possible_ortholog 3 retrogenes
retro_btau_1564, retro_btau_297, retro_btau_684,
Callithrix jacchus ENSCJAG00000007261 possible_ortholog 3 retrogenes
retro_cjac_1435, retro_cjac_2371, retro_cjac_607,
Dasypus novemcinctus ENSDNOG00000019724 possible_ortholog 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Dipodomys ordii ENSDORG00000001086 ortholog_one2one 1 retrogene
retro_dord_521,
Erinaceus europaeus ENSEEUG00000010052 possible_ortholog 1 retrogene
retro_eeur_327,
Echinops telfairi ENSETEG00000000242 ortholog_one2one 1 retrogene
retro_etel_11,
Homo sapiens ENSG00000127314 ortholog_one2one 2 retrogenes
retro_hsap_3338, retro_hsap_4234,
Gorilla gorilla ENSGGOG00000025649 possible_ortholog 1 retrogene
retro_ggor_2836,
Loxodonta africana ENSLAFG00000016460 ortholog_one2one 1 retrogene
retro_lafr_482,
Microcebus murinus ENSMICG00000013148 possible_ortholog 1 retrogene
retro_mmur_116,
Myotis lucifugus ENSMLUG00000016606 ortholog_one2one 2 retrogenes
retro_mluc_1126, retro_mluc_2211,
Macaca mulatta ENSMMUG00000011442 possible_ortholog 2 retrogenes
retro_mmul_1151, retro_mmul_1863,
Monodelphis domestica ENSMODG00000007323 ortholog_one2one 5 retrogenes
retro_mdom_11, retro_mdom_1570, retro_mdom_1756, retro_mdom_1897, retro_mdom_429,
Mus musculus ENSMUSG00000052681 possible_ortholog 1 retrogene
retro_mmus_1370,
Nomascus leucogenys ENSNLEG00000003573 possible_ortholog 2 retrogenes
retro_nleu_1034, retro_nleu_481,
Oryctolagus cuniculus ENSOCUG00000029552 possible_ortholog 5 retrogenes
retro_ocun_1132, retro_ocun_1200, retro_ocun_597, retro_ocun_636, retro_ocun_796,
Otolemur garnettii ENSOGAG00000005746 possible_ortholog 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Procavia capensis ENSPCAG00000010977 ortholog_one2one 1 retrogene
retro_pcap_8,
Pongo abelii ENSPPYG00000004751 ortholog_one2one 1 retrogene
retro_pabe_3403,
Pan troglodytes ENSPTRG00000005197 possible_ortholog 3 retrogenes
retro_ptro_1812, retro_ptro_2383, retro_ptro_2877,
Rattus norvegicus ENSRNOG00000007048 possible_ortholog 4 retrogenes
retro_rnor_2479, retro_rnor_870, retro_rnor_871, retro_rnor_872,
Sarcophilus harrisii ENSSHAG00000011497 possible_ortholog 1 retrogene
retro_shar_425,
Sus scrofa ENSSSCG00000021148 ortholog_one2one 1 retrogene
retro_sscr_1125,
Sus scrofa ENSSSCG00000030014 possible_ortholog 2 retrogenes
retro_sscr_435, retro_sscr_909,
Tupaia belangeri ENSTBEG00000013380 possible_ortholog 4 retrogenes
retro_tbel_2145, retro_tbel_4650, retro_tbel_4658, retro_tbel_613,
Tarsius syrichta ENSTSYG00000000192 possible_ortholog 1 retrogene
retro_tsyr_910,
Tursiops truncatus ENSTTRG00000015712 ortholog_one2one 2 retrogenes
retro_ttru_1105, retro_ttru_134,
Vicugna pacos ENSVPAG00000000931 ortholog_one2one 2 retrogenes
retro_vpac_283, retro_vpac_408,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_85 93.48 100.00
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2. retro_cpor_632 83.06 66.85
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3. retro_cpor_739 83.33 80.43
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4. retro_cpor_1194 76.09 100.00
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Download FASTA sequences of all ENSCPOG00000008272 retrocopies