RetrogeneDB ID: | retro_ocun_862 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:29624523..29625132(+) | ||
Located in intron of: | ENSOCUG00000009346 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024765 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDT5 | ||
Ensembl ID: | ENSOCUG00000009308 | ||
Aliases: | None | ||
Description: | nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Source:HGNC Symbol;Acc:8052] |
Percent Identity: | 95.1 % |
Parental protein coverage: | 93.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MENQEATDSTQNVKQCIISEELISEGKWVKLEKTTYLDPTGKTRTWETVKRTTKKAQSADGVAVIPVLQR |
MENQEATDSTQN.KQCII.EELISEGKWVKLEKTTY.DPTGKTRTWETVKRTTKKAQ.ADGVAVIPVLQR | |
Retrocopy | MENQEATDSTQNAKQCIILEELISEGKWVKLEKTTYTDPTGKTRTWETVKRTTKKAQYADGVAVIPVLQR |
Parental | TLHYECIVLVKQFRPPMGGYCLEFPAGLIDDGESPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCT |
TLHYECIVLVKQF.PPMGGYCLEFP.GL.DDGESPEAAALRELEEE.GYKGDIAECSPAVCMDPGLSNCT | |
Retrocopy | TLHYECIVLVKQFQPPMGGYCLEFPVGLMDDGESPEAAALRELEEEMGYKGDIAECSPAVCMDPGLSNCT |
Parental | THIVTVTINGDDAENVRPKPKPGEGEFVEVISLPKNDLLKRLDALIAEEHLTVDARVYSYALAL |
THIVTVTINGDDAENVRPKPKPG.GEFVEVISLPKNDLLKRLDALIA.EHLTVDARVYSYALAL | |
Retrocopy | THIVTVTINGDDAENVRPKPKPG-GEFVEVISLPKNDLLKRLDALIAKEHLTVDARVYSYALAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 13 .19 RPM |
SRP017611_kidney | 0 .41 RPM | 16 .52 RPM |
SRP017611_liver | 0 .39 RPM | 16 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019509 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000004794 | 2 retrocopies | |
Equus caballus | ENSECAG00000023658 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006403 | 1 retrocopy | |
Felis catus | ENSFCAG00000025093 | 1 retrocopy | |
Homo sapiens | ENSG00000165609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006325 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012052 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010453 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017141 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012298 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009308 | 1 retrocopy |
retro_ocun_862 ,
|
Otolemur garnettii | ENSOGAG00000005816 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002091 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000002294 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017741 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011113 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007394 | 2 retrocopies |