Parental gene:

ENSSSCG00000011113

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:10:65552489..65574261(+)


>ENSSSCG00000011113
ATGGACCAGCAAGAGCCAGCGGAGCCTTCTCCGAATTCCAAACAGGCTGTTATTTCAGAGGAGTTAATTTCAGAAGGAAA
ATGGGTCAAGCTTGAAAAAACAACTTACAGGGATCCTACTGGAAAAACAAGAACTTGGGAAACTGTGAAGCGTACAACCA
GGAAAGGACAGTCGGCTGATGGCGTGTCCATCATCCCCGTCCTGCAGAGGACCCTGCACTACGAGTGTGTCGTGCTGGTC
AAGCAGTTCCGGCCGCCCATGGGAGGCTACTGCCTGGAGTTCCCCGCCGGTCTCATTGATGAGAACGAAAGCCCCGAAGC
AGCTGCTCTGCGGGAGCTCGAGGAAGAGACTGGCTACAAGGGAGATGTCGCCGAATGTTCTCCAGCTGTGTGTATGGACC
CGGGGCTGTCAAACTGTACCACCCACGTCGTGACCGTCATGATCAACGGGGATGACGCTGAGAACGTGAGGCCCAAGCCA
AAGCCAGGAGACGGAGAATTCGTGGAAGTAATTTCCTTACCAAAGAATGACCTGCTGAGCAGACTCCATGCTCTGGTAGC
CGACGAACACCTGACCGTGGATGCCCGAGTCTACTCGTACGCGCTGGCCCTGAAACACGCAAACACGAAGCCGTTTGAAG
TGCCCTTCCTCAAGTTTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 14 .73 RPM
SRP014902_testis 13 .30 RPM
SRP018856_adipose 17 .61 RPM
SRP018288_kidney 14 .68 RPM
SRP018288_lung 7 .84 RPM
SRP018288_liver 7 .84 RPM
SRP018288_heart 1 .44 RPM
SRP035408_liver 5 .55 RPM
SRP035408_brain 5 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019509 ortholog_one2many 2 retrogenes
retro_btau_1326, retro_btau_1438,
Canis familiaris ENSCAFG00000004794 ortholog_one2many 2 retrogenes
retro_cfam_435, retro_cfam_612,
Equus caballus ENSECAG00000023658 ortholog_one2many 1 retrogene
retro_ecab_647,
Echinops telfairi ENSETEG00000006403 ortholog_many2many 1 retrogene
retro_etel_946,
Felis catus ENSFCAG00000025093 ortholog_one2many 1 retrogene
retro_fcat_350,
Homo sapiens ENSG00000165609 ortholog_one2many 1 retrogene
retro_hsap_3580,
Gorilla gorilla ENSGGOG00000006325 ortholog_one2many 1 retrogene
retro_ggor_2415,
Loxodonta africana ENSLAFG00000012052 ortholog_one2many 1 retrogene
retro_lafr_226,
Myotis lucifugus ENSMLUG00000010453 ortholog_one2many 2 retrogenes
retro_mluc_1263, retro_mluc_2073,
Macaca mulatta ENSMMUG00000017141 ortholog_one2many 1 retrogene
retro_mmul_1828,
Nomascus leucogenys ENSNLEG00000012298 ortholog_one2many 1 retrogene
retro_nleu_2838,
Oryctolagus cuniculus ENSOCUG00000009308 ortholog_one2many 1 retrogene
retro_ocun_862,
Otolemur garnettii ENSOGAG00000005816 ortholog_one2many 2 retrogenes
retro_ogar_2071, retro_ogar_2988,
Pongo abelii ENSPPYG00000002091 ortholog_one2many 2 retrogenes
retro_pabe_2949, retro_pabe_3040,
Pan troglodytes ENSPTRG00000002294 ortholog_one2many 1 retrogene
retro_ptro_2427,
Rattus norvegicus ENSRNOG00000017741 ortholog_many2many 1 retrogene
retro_rnor_1672,
Tursiops truncatus ENSTTRG00000007394 ortholog_one2many 2 retrogenes
retro_ttru_209, retro_ttru_495,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_143 60.69 64.84
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Download FASTA sequences of all ENSSSCG00000011113 retrocopies