RetrogeneDB ID:

retro_ogar_1599

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873554.1:16149344..16149642(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000025127
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:HINT1
Ensembl ID:ENSOGAG00000008850
Aliases:None
Description:histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912]


Retrocopy-Parental alignment summary:






>retro_ogar_1599
ATGGCAGGTGAGACTGCCAGGGTTCAGTTGGCTGGGCCTGTTGCCAAGATCTTTGGTAAGCTCATCTGTGAGGAAATCCC
AGCTAAAATCATTTTTGTGGGTGACCTGTGTCTTGCTTTCCGTGACATTTCCCCTCAAGCACCAACACATCTTCTGGGGA
TACCCAAGAAACACATATGCCAGCATTCCGCAGTAGCAGATGATGAAAGCATTCTCATCACAACTGTCAGCAAGAAATGC
ACAGCTGATCTGGTCTGAGAAAGGTCACGGAATGGTGGTGACTGCAGGTCCAGATGGG

ORF - retro_ogar_1599 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.26 %
Parental protein coverage: 82.54 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISAAEDDD
MA.E.A..Q.A.P....IFGK.I..EIPAKIIF..D.CLAF.DISPQAPTH.L.IPKKHI.Q.SA...DD
RetrocopyMAGETARVQLAGPVAK-IFGKLICEEIPAKIIFVGDLCLAFRDISPQAPTHLLGIPKKHICQHSAVA-DD
ParentalESLLGHLMIVGKKCAADL-GLK-KGYRMVVNEGSDG
ES.L.....V.KKC.ADL.GL..KG..MVV..G.DG
RetrocopyESIL--ITTVSKKCTADL<GLR<KGHGMVVTAGPDG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1599 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 45 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000321521 retrocopy
Callithrix jacchus ENSCJAG000000143983 retrocopies
Equus caballus ENSECAG000000231803 retrocopies
Erinaceus europaeus ENSEEUG000000081751 retrocopy
Echinops telfairi ENSETEG000000101271 retrocopy
Homo sapiens ENSG000001695671 retrocopy
Gorilla gorilla ENSGGOG000000119671 retrocopy
Macropus eugenii ENSMEUG000000053682 retrocopies
Myotis lucifugus ENSMLUG000000010912 retrocopies
Macaca mulatta ENSMMUG000000099852 retrocopies
Monodelphis domestica ENSMODG000000287273 retrocopies
Mustela putorius furoENSMPUG000000116394 retrocopies
Mus musculus ENSMUSG000000202671 retrocopy
Nomascus leucogenys ENSNLEG000000124311 retrocopy
Oryctolagus cuniculus ENSOCUG000000066075 retrocopies
Otolemur garnettii ENSOGAG00000008850 2 retrocopies
retro_ogar_1028, retro_ogar_1599 ,
Otolemur garnettii ENSOGAG000000118301 retrocopy
Procavia capensis ENSPCAG000000047371 retrocopy
Pongo abelii ENSPPYG000000157472 retrocopies
Pan troglodytes ENSPTRG000000172061 retrocopy
Rattus norvegicus ENSRNOG000000006221 retrocopy
Sarcophilus harrisii ENSSHAG000000058342 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000279204 retrocopies



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