RetrogeneDB ID: retro_ogar_63

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873579.1:7218936..7219314(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026020
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000000638
• Aliases: None
• Description: None

Sequence

>retro_ogar_63
ATGGACCACAAGCCCCTGCTGCAGGAGCGGCCGCCCGCCTACAACCTGGAGGCCGGCCAGGGCGACTATGCCTGTGGCCC
GCACGGCTACGGCGCCATCCCCACCGCGCCCCCGCCGGCGCCCTACCCCTACCTCGTCACAGGGATACCCACCCACCACC
CCAGGGTCTACAGCATCCACAGCCGGACTGTCACCCGCTACCCCACCAACTCCATCGTCGTGGTCGGAGGTTGTCCGGTC
TGCAGGGTCGGGGTGCTGGAGGATGTCTTCACCTTCCTGGGCATTTTCTTGGCCATCATCTTGTTTCCCTTCGGGTTCAT
CTGCTGTTTTGCCTTGAGGAAGCGAAGATGCCCCAACTGTGGAGCGACCTTTACTTAA

Alignment

ORF - retro_ogar_63 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100.0 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDHKPLLQERPPAYNLEAGQGDYACGPHGYGAIPTAPPPAPYPYLVTGIPTHHPRVYSIHSRTVTRYPTN
          MDHKPLLQERPPAYNLEAGQGDYACGPHGYGAIPTAPPPAPYPYLVTGIPTHHPRVYSIHSRTVTRYPTN
Retrocopy MDHKPLLQERPPAYNLEAGQGDYACGPHGYGAIPTAPPPAPYPYLVTGIPTHHPRVYSIHSRTVTRYPTN

Parental  SIVVVGGCPVCRVGVLEDVFTFLGIFLAIILFPFGFICCFALRKRRCPNCGATFT
          SIVVVGGCPVCRVGVLEDVFTFLGIFLAIILFPFGFICCFALRKRRCPNCGATFT
Retrocopy SIVVVGGCPVCRVGVLEDVFTFLGIFLAIILFPFGFICCFALRKRRCPNCGATFT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_63 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015227	1 retrocopy	retro_cjac_2527,
Homo sapiens	ENSG00000164713	3 retrocopies	retro_hsap_1095, retro_hsap_1811, retro_hsap_195,
Gorilla gorilla	ENSGGOG00000009646	1 retrocopy	retro_ggor_205,
Microcebus murinus	ENSMICG00000002888	1 retrocopy	retro_mmur_372,
Macaca mulatta	ENSMMUG00000013275	2 retrocopies	retro_mmul_1248, retro_mmul_849,
Otolemur garnettii	ENSOGAG00000000638	1 retrocopy	retro_ogar_63 ,
Pongo abelii	ENSPPYG00000025815	3 retrocopies	retro_pabe_1484, retro_pabe_50, retro_pabe_910,
Pan troglodytes	ENSPTRG00000019436	1 retrocopy	retro_ptro_698,
Tursiops truncatus	ENSTTRG00000015705	2 retrocopies	retro_ttru_706, retro_ttru_91,