RetrogeneDB ID: | retro_ogar_742 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873526.1:33755606..33756079(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000033405 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSOGAG00000033272 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 93.71 % |
Parental protein coverage: | 77.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL |
VSVT.GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD.FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL | |
Retrocopy | VSVTMGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDIFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL |
Parental | LIGTQIDLRDDPK-TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPK |
LIGTQIDLRDDPK..LARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL.QKGLKTVFDE.IIAILTPK | |
Retrocopy | LIGTQIDLRDDPK<ILARLNDMKEKPICVEQGQKLAKEIGACCYVECSALIQKGLKTVFDEDIIAILTPK |
Parental | KHTVKKRIGSRCINSCLIT |
KHT....IGSRCINSCLIT | |
Retrocopy | KHTXXXXIGSRCINSCLIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000685 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000004327 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009124 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004138 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012467 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033272 | 1 retrocopy |
retro_ogar_742 ,
|
Pongo abelii | ENSPPYG00000012439 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy |