RetrogeneDB ID: | retro_tsyr_1609 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_510890:421..829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSTSYG00000002837 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 90. % |
Parental protein coverage: | 99.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE-EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLN |
EDYDRLRPLSYPMT.VFLICFSVVNPASFQNVKE.EWVPELKEYAPN.PFLLIGTQI.LRDDPKTLARLN | |
Retrocopy | EDYDRLRPLSYPMTNVFLICFSVVNPASFQNVKE<EWVPELKEYAPNIPFLLIGTQIGLRDDPKTLARLN |
Parental | DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI-LTPKKHTV-KKRIGSRCINCCLI |
DMKE.PICVEQGQKL.KEIGAC.Y.E.S.LTQKGLK.VFD.AIIAI.LTPKKHTV.KKRIGSRCINCCLI | |
Retrocopy | DMKERPICVEQGQKLVKEIGAC*YEERSTLTQKGLKSVFDDAIIAI<LTPKKHTV<KKRIGSRCINCCLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000685 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000004327 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009124 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033272 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012439 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000679 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy |
retro_tsyr_1609 ,
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