RetrogeneDB ID: | retro_ogar_825 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873528.1:25216298..25216773(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000003253 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.53 % |
Parental protein coverage: | 67.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LGPSLEDLFNFCSRRFTMKTVLMLADQMISRIE-YVHTKNFIHRDIKPDNFLM-GIGRHCNKLFLIDFGL |
LGPSLED.FN.CSRRFTMKTVL.LADQMIS..E.YVH.KN.I.RDIKPDNF.....G.HCNKLFL.D..L | |
Retrocopy | LGPSLEDFFNYCSRRFTMKTVLVLADQMISTLE>YVHLKNVIRRDIKPDNFQR<SVGHHCNKLFLTD--L |
Parental | AKKYRDNRTRQ-HIPYREDKNLTGTARYASINAHLGI-EQSRRDDMESLGYVLMYFNRTSLPWQGLKAAT |
A.......T.Q.H.P.REDKNL.GTA.YASINAHL.I.EQS.RDDMESLGYVLMYFN.TSLPWQGLKAAT | |
Retrocopy | A*QVSTETTGQGHTPHREDKNLSGTAGYASINAHLDI>EQSHRDDMESLGYVLMYFNITSLPWQGLKAAT |
Parental | KKQKYEKISEKKMSTPVEVLCKG |
KKQKYEKISEKKMSTPVEVLCKG | |
Retrocopy | KKQKYEKISEKKMSTPVEVLCKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005326 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018286 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013926 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003253 | 2 retrocopies |
retro_ogar_1195, retro_ogar_825 ,
|
Otolemur garnettii | ENSOGAG00000008746 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011587 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014866 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016063 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016785 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011446 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015356 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014435 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022141 | 1 retrocopy | |
Drosophila melanogaster | FBgn0015024 | 4 retrocopies |