RetrogeneDB ID: | retro_opri_449 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_1231:187604..188022(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA5 | ||
Ensembl ID: | ENSOPRG00000008863 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 5 [Source:HGNC Symbol;Acc:9534] |
Percent Identity: | 80.85 % |
Parental protein coverage: | 58.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQ |
GV.LAVEKRITSPL.EPSS.EKI.EI.A.IGCAMS.LIADA.TLIDKAR.E.QNHWFTY.ETMTVES.TQ | |
Retrocopy | GVFLAVEKRITSPLVEPSSTEKIMEINANIGCAMSSLIADAETLIDKARMEMQNHWFTYSETMTVESGTQ |
Parental | AVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF-VQCDARAIGSASEGAQSSLQE |
AVSNLALQFG..DAD.GAMS.PFGVALLFG.VDEKGPQLFHMDP.GTF.VQC.ARAIGSASE.....L.. | |
Retrocopy | AVSNLALQFG-QDADLGAMSCPFGVALLFGEVDEKGPQLFHMDPCGTF>VQCEARAIGSASELLAGILSQ |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000013670 | 1 retrocopy | |
Equus caballus | ENSECAG00000011835 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012916 | 1 retrocopy | |
Mus musculus | ENSMUSG00000068749 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008863 | 1 retrocopy |
retro_opri_449 ,
|
Rattus norvegicus | ENSRNOG00000019868 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006830 | 2 retrocopies |