>retro_pabe_2095
AAATCTTGTATCCGACGAAAGACAGATTCAATTGACAAACAATTCTGCTTCGACATACAAGTACTTGAAAGCCATGGGAT
CATCACATTACAGGCCTTCTCAGAAGCTAATAGGAAACTCTGGCTTGAAGCCACGGATGGGAAGGAGCCGATTTATACTC
TGCCTGACATTATAAGCAAGAAAGAAGAAATGTATTTGAATGAAGCAGGGTTCAATTTTGTGAGAAAATGCATTCAAGCC
ATGGAAACAAGCGGTATCACCATTTTAGGCCTCTACTGAATAGGAGGAGTGAACTCCAAAGTTCAAAAACTTGTGAATAT
CATATTTTCTCCTAAATCCCCTCCTGATATTGATATTGAACTGTGGGACAATAAGACAATAATGAGTGGGCTGAAAAACT
ACCTCAAGTGCTTTGCAGGACCACTGATGACTTACAAGTTACACAAAGATTTTTATCATTGCTGTTAAATCTGATGACCA
AAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCAGAGAAAAACAGAGAGATGCTGGACATCTTAATAA
AACATCTGGTCAAAGTATCACTGCACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACT
CTAATGAGAGCACAAGAACAAACTGTGGTTGCTATGGTGAATATTAAATTTCAGAATATTGTGTTAGAAATTCTTACAGA
GCATGATCAAATGATTTTTCATACTGCTCCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCAAA
GGACACGAGCAATCTGCCTCTCTACGGGCTCTAGGAAGCCCAGAGGGACGTGTACTCCACGCCTGGCCGAACCTGATAGT
GACTCCTATAGCAGCAGCTCAGACAGCACCCCCGTGGGGAGCATCAAGTCACTCTCTTCTCTTTCCTCGGAACAAAATAG
CACTACAAAGTCAGCTTCCTGCCACCCCAGGGAGAAATCTGGAGGGATTCCTTGGATTGCAACCCCGTCATCTTCCAATG
GACAGAAAAGCCTTGGTCTCTGGACAACCAGTCCTGAATCAAGCTCTAGAGAA
ORF - retro_pabe_2095 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.68 % |
Parental protein coverage: |
56.66 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KSCIRRKTDSIDKRFCFDIEVVERHGIITLQAFSEANRKLWLEAMDGKEPIYTLPAIISKKEESKSFLYL |
| KSCIRRKTDSIDK.FCFDI.V.E.HGIITLQAFSEANRKLWLEA.DGKEPIYTLP.IISKKEE.....YL |
Retrocopy | KSCIRRKTDSIDKQFCFDIQVLESHGIITLQAFSEANRKLWLEATDGKEPIYTLPDIISKKEE----MYL |
|
Parental | NEAGFNFVRKCIQAVETRGITILGLYRIGGVNSKVQKLMNTTFSPKSPPDIDIDIELWDNKTITSGLKNY |
| NEAGFNFVRKCIQA.ET.GITILGLY.IGGVNSKVQKL.N..FSPKSPPDIDI..ELWDNKTI.SGLKNY |
Retrocopy | NEAGFNFVRKCIQAMETSGITILGLY*IGGVNSKVQKLVNIIFSPKSPPDIDI--ELWDNKTIMSGLKNY |
|
Parental | LRCLAEPLMTYKLHKD-FIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTV |
| L.C.A.PLMTYKLHKD.FIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTV |
Retrocopy | LKCFAGPLMTYKLHKD>FIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTV |
|
Parental | SNLGVIFGPTLMRAQEETVAAMMNIKFQNIVVEILIEHYEKIFHTAPDPSIPLPQPQSRSGSRRTRAICL |
| SNLGVIFGPTLMRAQE.TV.AM.NIKFQNIV.EIL.EH...IFHTAPDPSIPLPQPQSRSGS.RTRAICL |
Retrocopy | SNLGVIFGPTLMRAQEQTVVAMVNIKFQNIVLEILTEHDQMIFHTAPDPSIPLPQPQSRSGSQRTRAICL |
|
Parental | STGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSIESLSSHSSEQNSTTKSASCQPREKSGGIPWIATPS |
| STGSRKPRG..TP.LAEPDSDSYSSS.DSTP.GSI.SLSS.SSEQNSTTKSASC.PREKSGGIPWIATPS |
Retrocopy | STGSRKPRGTCTPRLAEPDSDSYSSSSDSTPVGSIKSLSSLSSEQNSTTKSASCHPREKSGGIPWIATPS |
|
Parental | SSNGQKSLGLWTTSPESSSKE |
| SSNGQKSLGLWTTSPESSS.E |
Retrocopy | SSNGQKSLGLWTTSPESSSRE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .11 RPM |
1 .38 RPM |
SRP007412_cerebellum |
0 .85 RPM |
1 .09 RPM |
SRP007412_heart |
0 .00 RPM |
0 .99 RPM |
SRP007412_kidney |
0 .03 RPM |
5 .57 RPM |
SRP007412_liver |
0 .00 RPM |
2 .75 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_2095 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_2095 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_2095 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
10 retrocopies.