RetrogeneDB ID: | retro_pabe_2355 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:142107534..142108197(-) | ||
Located in intron of: | ENSPPYG00000014158 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DTWD1 | ||
Ensembl ID: | ENSPPYG00000006464 | ||
Aliases: | None | ||
Description: | DTW domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5RCQ0] |
Percent Identity: | 95.07 % |
Parental protein coverage: | 73.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSLNPPIFLKRSEENNSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLKCGGSRMFYCY |
MSLNPPIFLKRSEENNSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRS.CLKCG.SRMFY.Y | |
Retrocopy | MSLNPPIFLKRSEENNSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRS*CLKCGSSRMFYHY |
Parental | TCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVNIYTYPCIPEYEEKDHEVALV |
TCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAK.LAPEFVNIYTY.CIPEYEEKDHEVALV | |
Retrocopy | TCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKFLAPEFVNIYTYSCIPEYEEKDHEVALV |
Parental | FPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKRAEEQEFCDLNDSKCKGTTLKKIIFIDSTWN |
F..PQSISIKDI.FHLQKRIQNNV..KNDDPDKPSFKRKR.EEQEFCDLNDSKCKGTTLKKIIFIDSTWN | |
Retrocopy | F--PQSISIKDICFHLQKRIQNNVSSKNDDPDKPSFKRKRTEEQEFCDLNDSKCKGTTLKKIIFIDSTWN |
Parental | QTNKIFTDERLQG |
QTNKIFTDERLQG | |
Retrocopy | QTNKIFTDERLQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .99 RPM |
SRP007412_heart | 0 .00 RPM | 2 .14 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .15 RPM |
SRP007412_liver | 0 .00 RPM | 1 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2846 |
Pan troglodytes | retro_ptro_1928 |
Gorilla gorilla | retro_ggor_1973 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014926 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003461 | 2 retrocopies | |
Homo sapiens | ENSG00000104047 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027921 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006167 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013291 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002951 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006464 | 2 retrocopies |
retro_pabe_2355 , retro_pabe_2356,
|
Pan troglodytes | ENSPTRG00000007058 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008358 | 2 retrocopies |