RetrogeneDB ID: | retro_ogar_499 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873522.1:46021198..46021694(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DTWD1 | ||
Ensembl ID: | ENSOGAG00000013291 | ||
Aliases: | None | ||
Description: | DTW domain containing 1 [Source:HGNC Symbol;Acc:30926] |
Percent Identity: | 59.17 % |
Parental protein coverage: | 55.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LPLKIDIIKHPNETDGKSTAIHAKLLAPEFVNIYTYPCIPEYEEKDHEVVLVFPGPQSISIKDISFHLQK |
L.L..DIIK.PNETDG...AI.A.L.APEFVNIYTY..I.E.E.KDHE.VLVF.GPQSIS..DISFHLQK | |
Retrocopy | LSLEMDIIKYPNETDGRGSAIPANLSAPEFVNIYTYLLISEHEGKDHEGVLVFHGPQSISMEDISFHLQK |
Parental | RIQHNVRGKNDDPDMPSFKRKKTEDQEDYDLND-SKRKGTTLKKVIFIDSTWNQTNKIITDERLQGLLQV |
RI..N..GK.D.P..PSFK.K....Q.D.DLN..SK.KGTT..KVIF...TW.QT.K........G.... | |
Retrocopy | RIHNNSGGKRDEPTVPSFKHKEPDVQTDCDLNG<SKYKGTTRTKVIFKGNTWHQT-KYPLMSNFKGCYKL |
Parental | ELKTRKTCF-WRHQKGKPDTFLSTIEAIY |
..K.....F.WRHQK..PDT.LS..EAIY | |
Retrocopy | N*KQEELAF<WRHQKEEPDTLLSATEAIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014926 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003461 | 2 retrocopies | |
Homo sapiens | ENSG00000104047 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027921 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006167 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013291 | 1 retrocopy |
retro_ogar_499 ,
|
Ochotona princeps | ENSOPRG00000002951 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006464 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007058 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008358 | 2 retrocopies |