RetrogeneDB ID: | retro_vpac_509 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_271876:192..765(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000011474 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DTWD1 | ||
Ensembl ID: | ENSVPAG00000008358 | ||
Aliases: | None | ||
Description: | DTW domain containing 1 [Source:HGNC Symbol;Acc:30926] |
Percent Identity: | 67.51 % |
Parental protein coverage: | 63.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | HAKLLAPEFVNIYTYPCIPEYEEKDHEVALVFPGPKSVSVKDISFHLQKRIQN-VRSK-NDDPDKPSIKR |
H..L....F..IYT.PCIP.YEEKDHEVA..FP.P.SVS.K.ISFHLQKRIQN.V..K..D.PDK..IK. | |
Retrocopy | HLSL*VYRF*GIYTCPCIPDYEEKDHEVAPIFPEPMSVSIKGISFHLQKRIQNNVEAK<DDGPDKLPIKC |
Parental | KKTEEQG-LNDSKCEDTTLKKIVFIDSTWNQTN-KIFTDERLQGLLQVELKTRKTCFWRHQKGK-PDTFL |
KKTEE.G.LND.KC.D.TL....F.DSTWNQTN.KIFT.ER.QGLL.VE....K........GK.PDTFL | |
Retrocopy | KKTEETG>LNDIKCKDKTLXXXLFTDSTWNQTN>KIFTNERFQGLLGVE--NKKNLLLEPSEGK>PDTFL |
Parental | STIEAIYYFLVDYHTDILKEKYKGQYDNLLFF-YSFMHQLIKNAKCPGNKETRKLTR |
ST..AIYYFLVD..TD.LKEKYKGQ.DNLL.F.Y.FM.QLIKNAKCPG.KETRKL.R | |
Retrocopy | STMGAIYYFLVDNRTDLLKEKYKGQLDNLLVF>YFFMYQLIKNAKCPGDKETRKLNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014926 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003461 | 2 retrocopies | |
Homo sapiens | ENSG00000104047 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027921 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006167 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013291 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002951 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006464 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007058 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008358 | 2 retrocopies |
retro_vpac_509 , retro_vpac_530,
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