RetrogeneDB ID: | retro_pabe_2415 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3_random:3896435..3897734(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAP1 | ||
Ensembl ID: | ENSPPYG00000001496 | ||
Aliases: | None | ||
Description: | adenylyl cyclase-associated protein 1 [Source:RefSeq peptide;Acc:NP_001126158] |
Percent Identity: | 88.56 % |
Parental protein coverage: | 91.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PYVQVFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPADNKLSDLLAPISEQ |
PYVQ.FDSL.AG.VAEYLKISKE..GDVQK.AEMVHTGLKLERALLVTASQCQQPADNKLS.LLAP.SEQ | |
Retrocopy | PYVQAFDSLFAGAVAEYLKISKETEGDVQKYAEMVHTGLKLERALLVTASQCQQPADNKLSNLLAPTSEQ |
Parental | IKEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVD |
IKEVITFREKNRG.KLFNHLSAVSESIQALGWVAMAPKPGPYVK.MNDAAMFYTN.VLKEYKDVDKKHVD | |
Retrocopy | IKEVITFREKNRGNKLFNHLSAVSESIQALGWVAMAPKPGPYVK*MNDAAMFYTNQVLKEYKDVDKKHVD |
Parental | -WVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGP-PPPPVSTSSGSD |
.WVKAYLSIWTELQA.IKEFHTTGL...K.G........LPSGPS.GSGPPPPPPGP.PPP.VSTSSGSD | |
Retrocopy | <WVKAYLSIWTELQAHIKEFHTTGLPGAKRGCGKRTEWTLPSGPSEGSGPPPPPPGP<PPPLVSTSSGSD |
Parental | ESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPLRSGPKPFSAPKPQTSQSPKPATKKEP |
ES.SRSALFAQINQGESITHAL.HVSDDMKTHKNPALKAQSGP.RSGPKPFSAPKPQTS.S.KPATKKEP | |
Retrocopy | ESTSRSALFAQINQGESITHALNHVSDDMKTHKNPALKAQSGPVRSGPKPFSAPKPQTSPSSKPATKKEP |
Parental | AVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGL-VFDDVVGI |
AVLELEGKKWRVE.QENVSNLVIEDTELKQ.AYIYKCV..TLQIKGK.N.ITV.NCKKLGL.VFDDVV.I | |
Retrocopy | AVLELEGKKWRVEHQENVSNLVIEDTELKQMAYIYKCVHMTLQIKGKMNAITVANCKKLGL<VFDDVVSI |
Parental | VEIINSRDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFK |
VEII.S.DVKVQVMGKVPT.SINKTDGCHAYLSKNSLDCEIVSAKSSEMN.LIPTEGGDFNEFPVPEQF. | |
Retrocopy | VEIISSKDVKVQVMGKVPTTSINKTDGCHAYLSKNSLDCEIVSAKSSEMNALIPTEGGDFNEFPVPEQFQ |
Parental | TLWNGQKLVTTVTEIAG |
TL..GQKLVT.VTEIAG | |
Retrocopy | TLGHGQKLVTRVTEIAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .86 RPM |
SRP007412_heart | 0 .00 RPM | 11 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 28 .21 RPM |
SRP007412_liver | 0 .00 RPM | 22 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003012 | 2 retrocopies | |
Homo sapiens | ENSG00000131236 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027527 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004960 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028656 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012077 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005492 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001496 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000000583 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013492 | 1 retrocopy |