RetrogeneDB ID: | retro_rnor_1180 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:18091513..18092290(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cap1 | ||
Ensembl ID: | ENSRNOG00000013492 | ||
Aliases: | Cap1, Mch1 | ||
Description: | Adenylyl cyclase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q08163] |
Percent Identity: | 69.58 % |
Parental protein coverage: | 54.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MQNLVERLERAVGRLEAVSHTSDMHCGYGDSPSKGAVPYVQAFDSLLANPVAEYLKMSKEIGGDVQKHAE |
.QNLV.RL.RAVG.L.AVSHTSDMHCG.GDSPSKG..PYVQAFDSLLA.P..EYL.MSKEI.GD.QKHAE | |
Retrocopy | VQNLVDRLKRAVGCLQAVSHTSDMHCG*GDSPSKGVIPYVQAFDSLLAIPMEEYLTMSKEIWGDTQKHAE |
Parental | MVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITFRE-KNRGSKF-FNHLSAVSESIQALG |
MV.TGLKLERALLVTAS.C.Q.A.N.LSDLLAP.SEQIQ.V....E.......F.F...SA..ESIQALG | |
Retrocopy | MVRTGLKLERALLVTASWCKQSASNQLSDLLAPVSEQIQDVLLPGE<RTKAARF<FDSVSAIRESIQALG |
Parental | WVALAAKPGPFVKEMNDAAMFYTNRVLKE-YRDVDKKHVDWVR-AYLSIWTELQAYIKEFHTTGLAWSKT |
.VAL..KPG.FVK..ND..MFY.N.V.KE.YRD...KHV.WVR...LS.W.E.QA.IK.FH.TGLAWSK. | |
Retrocopy | *VALTEKPGLFVK*INDVVMFYKNQVHKE>YRDME*KHVGWVR>TFLSLWIEQQAHIKKFHATGLAWSKM |
Parental | GPVAKELSGLPSGPSVGSGPPPPPPGPPPPPVPTSSGSDDSASRSALFAQINQ |
.PVAKELSG.P.GP.VGSGPPPP.PG..PP..P.SSGS..SAS.SALFAQI.. | |
Retrocopy | APVAKELSGWPYGPFVGSGPPPPTPGSLPPLIPISSGSENSASHSALFAQIKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 230 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 134 .54 RPM |
SRP017611_liver | 0 .00 RPM | 43 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1265 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003012 | 2 retrocopies | |
Homo sapiens | ENSG00000131236 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027527 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004960 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028656 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012077 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005492 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001496 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000000583 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013492 | 1 retrocopy |
retro_rnor_1180 ,
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