Parental gene:

CAP1, ENSCAFG00000003012

Aliases:None
Description:Adenylyl cyclase-associated protein [Source:UniProtKB/TrEMBL;Acc:E2QZ50]
Organism:Dog (Canis familiaris)
Coordinates:15:2887749..2899270(-)


>ENSCAFG00000003012
ATGGCCGACATGCAAAAGCTGGTGGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCAGTATCCCATGCTTCTGACAT
GCACTGTGGGTATGGAGACAGCGCTCCAAAAGCAGGAGCAGCTCCATATGTGCAAGCATTTGACTCACTCCTTGCTGGTC
CTGTGGCAGAGTACCTGAAGATCAGTAAAGAGATTGGGGGAGATGTGCAAAAACATGCGGAGATGGTCCACACAGGTCTG
AAGTTGGAGCGAGCTCTCTTGGTTACAGCGTCTCAGTGTCAGCAGCCAGCAGGCAATAAACTTTCTGACTTGTTGGCACC
CATCTCAGAGCAGATCCAAGAAGTGATAACCTACCGGGAGAAGAACCGAGGCAGCAAGTTGTTCAATCACCTGTCAGCTG
TCAGCGAAAGTATCCAGGCCCTGGGTTGGGTAGCTATGGCTCCCAAGCCCGGTCCCTATGTGAAAGAAATGAATGATGCT
GCCATGTTTTACACAAACCGAGTCCTCAAGGAGTACAAAGATGTCGATAAGAAGCATGTGGATTGGGTCAAAGCTTACTT
GAGTATATGGACAGAGCTACAGGCTTACATTAAGGAGTTCCATACCACCGGACTGGCCTGGAGCAAAACGGGGCCTGTGG
CACAAGAATTGAGTGGATTGCCATCTGGACCCTCTGCTGGATCGGGTCCTCCTCCTCCCCCACCAGGCCCCCCTCCCCCA
CCAGTCCCCACCAGTTCAGGCTCAGATGAGTCTGCTTCCCGCTCAGCACTGTTTGCGCAGATTAATCAGGGGGAGAGCAT
CACACATGCCCTGAAACATGTATCTGATGACATGAAGACTCACAAGAACCCCGCCCTGAAGGCTCAGAGTGGTCCAGTAC
GAAGTGGCCCCAAACCGTTCTCTGCACCTAAACCAGGAGTCAGCCCATCCCCCAAGCCAACCGCAAAGAAGGAGCCAGCT
GTACTTGAACTAGAGGGCAAGAAGTGGAGAGTGGAAAATCAGGAAAATGTTTCCAACCTCGTGATTGATGACACAGAGCT
GAAGCAGGTGGCTTACATATACAAATGTGTCAACACAACATTGCAAATCAAGGGCAAAATAAACTCCATTACAGTAGATA
ACTGTAAGAAACTCGGTCTGGTGTTCGATGACGTCGTGGGCATTGTGGAGATAATCAATAGTAGGGATGTCAAAGTTCAG
GTAATGGGTAAAGTGCCAACCATTTCCATCAACAAAACAGATGGCTGCCATGTTTACCTGAGCAAGAATTCCCTGGATTG
CGAAATAGTCAGTGCCAAATCTTCTGAGATGAATGTCCTCATTCCTACTGAAGGCGGTGACTATAATGAATTCCCAGTCC
CTGAGCAGTTCAAGACCCTATGGAATGGGCAGAAGTTGGTCACCACAGTGACAGAAATTGCTGGATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 93 .36 RPM
SRP017611_brain 163 .39 RPM
SRP017611_kidney 79 .44 RPM
SRP017611_liver 37 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004417 ortholog_one2one 1 retrogene
retro_amel_1891,
Bos taurus ENSBTAG00000013363 ortholog_one2one 1 retrogene
retro_btau_460,
Canis familiaris ENSCAFG00000009977 within_species_paralog 1 retrogene
retro_cfam_1385,
Equus caballus ENSECAG00000024658 ortholog_one2one 1 retrogene
retro_ecab_119,
Homo sapiens ENSG00000131236 possible_ortholog 2 retrogenes
retro_hsap_2666, retro_hsap_664,
Gorilla gorilla ENSGGOG00000027527 possible_ortholog 2 retrogenes
retro_ggor_1860, retro_ggor_575,
Macropus eugenii ENSMEUG00000004960 ortholog_one2many 1 retrogene
retro_meug_544,
Myotis lucifugus ENSMLUG00000011626 possible_ortholog 1 retrogene
retro_mluc_847,
Mus musculus ENSMUSG00000028656 possible_ortholog 1 retrogene
retro_mmus_1265,
Nomascus leucogenys ENSNLEG00000012077 possible_ortholog 2 retrogenes
retro_nleu_1600, retro_nleu_2221,
Otolemur garnettii ENSOGAG00000005492 possible_ortholog 1 retrogene
retro_ogar_299,
Pongo abelii ENSPPYG00000001496 possible_ortholog 4 retrogenes
retro_pabe_2212, retro_pabe_2358, retro_pabe_2415, retro_pabe_584,
Pan troglodytes ENSPTRG00000000583 possible_ortholog 2 retrogenes
retro_ptro_1796, retro_ptro_484,
Rattus norvegicus ENSRNOG00000013492 possible_ortholog 1 retrogene
retro_rnor_1180,
Tursiops truncatus ENSTTRG00000004358 ortholog_one2one 1 retrogene
retro_ttru_1689,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_645 77.70 90.74
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2. retro_cfam_1316 84.67 62.32
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Download FASTA sequences of all ENSCAFG00000003012 retrocopies