RetrogeneDB ID: | retro_pabe_3162 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:92629212..92629718(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAD23B | ||
Ensembl ID: | ENSPPYG00000019477 | ||
Aliases: | None | ||
Description: | RAD23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:9813] |
Percent Identity: | 65.5 % |
Parental protein coverage: | 50.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVTKPKAVSTPAPATTQQSAPASTTA-VTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPASAS |
MVTKPKAV..PAPATTQQS.PA.....V.SS....VA...T...A.APTSTP.SITPA..TA..E....S | |
Retrocopy | MVTKPKAVTIPAPATTQQSNPATAMK<VSSSSAAAVA*PATLISAFAPTSTPISITPAPTTACPEHVPSS |
Parental | AAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAAL |
A.KQ.KP.EK.AETPVATS...T.S..GDSS..NLFE.A.S.LV.GQSYENMVTE.MSMGY..EQ.I.AL | |
Retrocopy | AMKQDKPGEKSAETPVATSSASTESRAGDSSLPNLFEVA-STLVKGQSYENMVTEVMSMGYKQEQAIVAL |
Parental | RASFNNPDRAVEYLLMGIPGDRESQAVVDPP |
R..FNNPDR.V.YLL.GIPG.R.SQAVV..P | |
Retrocopy | RVIFNNPDRGVQYLLIGIPGGRKSQAVVEHP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 96 .10 RPM |
SRP007412_cerebellum | 0 .00 RPM | 107 .50 RPM |
SRP007412_heart | 0 .00 RPM | 63 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 66 .86 RPM |
SRP007412_liver | 0 .00 RPM | 84 .03 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3754 |
Macaca mulatta | retro_mmul_1725 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016908 | 2 retrocopies | |
Equus caballus | ENSECAG00000021928 | 1 retrocopy | |
Homo sapiens | ENSG00000119318 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002511 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014944 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017319 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007316 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014216 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019477 | 2 retrocopies |
retro_pabe_2344, retro_pabe_3162 ,
|
Pan troglodytes | ENSPTRG00000021229 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011925 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005436 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007597 | 1 retrocopy |