Parental gene: | RAD23B, ENSMMUG00000014944 |
| Aliases: | None |
| Description: | UV excision repair protein RAD23 homolog B [Source:RefSeq peptide;Acc:NP_001248717] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 15:28868242..28915241(-) |
>ENSMMUG00000014944
ATGCAGGTCACCCTGAAGACCCTCCAGCAGCAGACCTTCAAAATAGACATCGACCCCGAGGAGACGGTGAAAGCACTGAA
AGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCGGTAGCAGGTCAAAAATTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTCAAAGAATACAAAATTGATGAGAAAAACTTTGTGGTGGTTATGGTGACCAAACCCAAAGCAGTG
TCCACACCAGCACCAGCTACAACTCAGCAGTCAGCTCCTGCGAGCACTACAGCCATTACTTCCTCTACCGCAACAACTGT
GGCTCAGGCTCCAACCCCTGTCCCTGCTTTGGCTCCCACTTCCACACCTGCATCCATCACTCCAGCATCAGCGACAGCAT
CTTCTGAACCTGCACCTGCTAGTGCAACTAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAGACACCAGTGGCTACTAGC
CCAACAGCAACTGACAGTACATCGGGAGATTCTTCTCGATCAAACCTTTTTGAAGATGCAACGAGTGCACTTGTGACGGG
TCAGTCTTACGAGAATATGGTAACTGAGATCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAGTATCTTTTAATGGGAATCCCTGGAGATAGAGAAAGTCAGGCTGTGGTTGAC
CCCCCTCAAGCAGCTAGTACTGGGGCTCCTCAGTCTTCAGCAGTGGCTGCAGCTGCAGCAACTACGACAGCAACGACAAC
AACAACAAGTTCTGGAGGACATCCCCTTGAATTTTTACGGAATCAACCTCAGTTTCAACAGATGAGACAAATTATTCAAC
AGAATCCTTCCCTGCTTCCAGCATTACTACAGCAGATAGGTCGAGAGAATCCTCAGTTACTTCAGCAAATTAGCCAACAC
CAGGAGCATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGTGGTCAAGGAGGAGGAGGTGGAGGTGGCAGTGG
AGGAATTGCAGAAGCTGGAAGTGGTCATATGAACTACATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAA
AGGCATTAGGATTTCCTGAAGGACTTGTGATACAAGCATATTTTGCTTGTGAGAAGAATGAGAATTTGGCTGCCAATTTT
CTTCTACAGCAGAACTTTGATGAAGATTGA
ATGCAGGTCACCCTGAAGACCCTCCAGCAGCAGACCTTCAAAATAGACATCGACCCCGAGGAGACGGTGAAAGCACTGAA
AGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCGGTAGCAGGTCAAAAATTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTCAAAGAATACAAAATTGATGAGAAAAACTTTGTGGTGGTTATGGTGACCAAACCCAAAGCAGTG
TCCACACCAGCACCAGCTACAACTCAGCAGTCAGCTCCTGCGAGCACTACAGCCATTACTTCCTCTACCGCAACAACTGT
GGCTCAGGCTCCAACCCCTGTCCCTGCTTTGGCTCCCACTTCCACACCTGCATCCATCACTCCAGCATCAGCGACAGCAT
CTTCTGAACCTGCACCTGCTAGTGCAACTAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAGACACCAGTGGCTACTAGC
CCAACAGCAACTGACAGTACATCGGGAGATTCTTCTCGATCAAACCTTTTTGAAGATGCAACGAGTGCACTTGTGACGGG
TCAGTCTTACGAGAATATGGTAACTGAGATCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAGTATCTTTTAATGGGAATCCCTGGAGATAGAGAAAGTCAGGCTGTGGTTGAC
CCCCCTCAAGCAGCTAGTACTGGGGCTCCTCAGTCTTCAGCAGTGGCTGCAGCTGCAGCAACTACGACAGCAACGACAAC
AACAACAAGTTCTGGAGGACATCCCCTTGAATTTTTACGGAATCAACCTCAGTTTCAACAGATGAGACAAATTATTCAAC
AGAATCCTTCCCTGCTTCCAGCATTACTACAGCAGATAGGTCGAGAGAATCCTCAGTTACTTCAGCAAATTAGCCAACAC
CAGGAGCATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGTGGTCAAGGAGGAGGAGGTGGAGGTGGCAGTGG
AGGAATTGCAGAAGCTGGAAGTGGTCATATGAACTACATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAA
AGGCATTAGGATTTCCTGAAGGACTTGTGATACAAGCATATTTTGCTTGTGAGAAGAATGAGAATTTGGCTGCCAATTTT
CTTCTACAGCAGAACTTTGATGAAGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 106 .78 RPM |
| SRP007412_brain | 126 .62 RPM |
| SRP007412_cerebellum | 119 .66 RPM |
| SRP007412_heart | 88 .09 RPM |
| SRP007412_kidney | 83 .68 RPM |
| SRP007412_liver | 74 .93 RPM |
| SRP007412_testis | 78 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001926 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016908 | ortholog_one2many | 2 retrogenes | |
| Equus caballus | ENSECAG00000021928 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000119318 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002511 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017319 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000007316 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014216 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019477 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000021229 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000011925 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000005436 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000007597 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_1476 | 84.19 | 56.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_1725 | 65.24 | 55.50 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000014944 retrocopies